Gene Daci_1822 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_1822 
SymbolpanB 
ID5747380 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp2017510 
End bp2018391 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content70% 
IMG OID641296902 
Product3-methyl-2-oxobutanoate hydroxymethyltransferase 
Protein accessionYP_001562849 
Protein GI160897267 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0413] Ketopantoate hydroxymethyltransferase 
TIGRFAM ID[TIGR00222] 3-methyl-2-oxobutanoate hydroxymethyltransferase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.244764 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCAAG CACCCGTCAC CGCCGGCACG CCCTACGGCA CCATCCCTCC CGCCTCGCCG 
CTGCCCCAGC GCCGCCCCGT GAGCCTTCCG CGCCTGGCGC AGATGCGCGA GGCCGGCGAG
AAGATCACCA TGGTCACCGC GTATGACGCC ACATTCGCGG CCGTGGCCGA TGCGGCCGGC
GTGGAGTGCA TCCTGGTCGG TGATTCGCTG GGCATGGTCT GCCAGGGCCT GCACAGCACC
GTGGGCGTGT CGCTGCAGGA CATGTGCTAC CACACGGCCA GCGTGGCGCG CGGCCTGCAC
CGCGTGCAGG GCACGGCCTG GCTGATCGCC GACATGCCCT ATGGCAGCTA CGCCGAAAGC
CGCGAGCAGG CCATGCGCAG CGCCTGCGAG CTGATGCAGG CCGGCGCCCA TATGGTCAAG
CTCGAAGGCG GCGGCTGGAC CGCGCCCACC GTGCAATTCC TGGTCGAGCG CGGCGTGCCC
GTCTGCGCCC ACCTGGGCCT GACGCCGCAG ACCGTGCATG CGCTGGGCGG CTACCGCGTC
CAGGGCAAGA GCGACGAGGG CGCGGCCACG CTGCGCCGCC ATGCGCTGGA GCTGCAGGAT
GCAGGCGCCT CCATGCTGGT GCTGGAGATG GTGCCGGCAC AGCTGTCGCG CGAACTCACG
GCCGAGCTGC CGCACTGCCA CACCATCGGC ATCGGCGCGG GCAGCGGCAC GGCCGGCCAG
GTCCTGGTGC TGCACGACAT GCTGGGCGTG AACCTGGGCA AGATGGCCCG CTTCGTGCAC
AACTTCATGG CGGATGCGGG CAGCGTCAAA GGCGCCTTCG AGGCCTATGT GCATGCCGTG
AAGAACGGCA GCTTCCCCGA CGACAGCAAG CACGCCTGGT AG
 
Protein sequence
MTQAPVTAGT PYGTIPPASP LPQRRPVSLP RLAQMREAGE KITMVTAYDA TFAAVADAAG 
VECILVGDSL GMVCQGLHST VGVSLQDMCY HTASVARGLH RVQGTAWLIA DMPYGSYAES
REQAMRSACE LMQAGAHMVK LEGGGWTAPT VQFLVERGVP VCAHLGLTPQ TVHALGGYRV
QGKSDEGAAT LRRHALELQD AGASMLVLEM VPAQLSRELT AELPHCHTIG IGAGSGTAGQ
VLVLHDMLGV NLGKMARFVH NFMADAGSVK GAFEAYVHAV KNGSFPDDSK HAW