| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1685 |
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| Symbol | |
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| ID | 5747243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 1874901 |
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| End bp | 1876658 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641296766 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001562713 |
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| Protein GI | 160897131 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGCGG CGGGCTGGAG CATGGTTGCC GGCGATCCCG CCGCACCGGG CGAGGCGCTG
GACGAAGACC TCAAGCGCGT GGCCATGGAG GCCGCGCCCG ACGGTATCTT GCTTGTGGAC
CGCAGCGGCC GGATCCTGCT GGCCAATCCC GCCATGCAGG CCATGAGCGG CTATGGCGCC
GCCGAATTGC TGGGCCACTC GCTGCAGATG CTGCTGCCGG CCGAGGCGCA GGCGGCCCAC
GGGCCGCAAC TGCAGTCCTA CTTCGCCCAG CCCGCGCGCC GGCCCATGGG CCAGGGGCGG
GACCTGTGGC TGCTGCGCAA GGACGGCAAG CGCCTGTCGG TGGACATCGC CCTGGGCCAC
TCGCCGCACG GCAGCGGCGT GGCCGTGGCC TTCGTGCGCG ACCTGTCGCA GCTGCGCCAG
ATGGAAGCCT GCATGCACTA CCACGCCACC CACGACACGC TGACGGGCCT GCTCAACCGC
TGGCAGTTCG GGCTGCAGGT GGAACAGGCG ATCTCGCAGG CGCAGGCGCA GTCTGAATCG
GGCGCCGGCC CCGCGTCCTT TGCGCTGCTG CTGCTCGACC TCGACAACTT CAAGGCCATC
AACGACGGTT ATGGCCACGA CGTGGGCGAC CAGGTCCTCA AGGAGGTGGC GCGCCGCCTG
CAGGCCGCGC TGGGCGGCTC GGCCACGCTG GCGCGCATGG GCGGTGACGA GTTCACCGCC
CTGCTGCAGC CCTGCAACGA GCCCGATCTG CGCCAGCGCA TCGACGCGCT GCTGCACGAG
CTGTGCCGGC CCTGCACCAT AGGCCACTAC GCGCTGAACT TCGGTGCCAG CGTGGGCGCA
GCCTTCTATC CCCAGGACGC GGGCGATGCG GCCACCCTCA TGCGCTATGC CGACATGGCC
ATGTACGACG CCAAGCAGCG CAGCCGCTCC TCCTATGCGC GCTATGCCAG CGCCATGGGC
GAGGCCATGG CCGAGAAAGT GCTGCTGCAC GAACGCCTCA AGCGTGCCCT GGACCGGGGC
CTGCTGAGCC TGCACTTCCA GCCCCAGGTG CAGGTGCTGG GCGGCCAGGT CCAGGGCGTG
GAAGCGCTGC TGCGCTGGAA CGACGAGCAG ATGGGCTGGG TCTCGCCCGA ACGCTTCGTG
CCCGTGGCCG AATCCACGGG CCTGATCCTG GCCCTGGGGG AGTGGGTGAT CGATGCTGCC
TGCCGCCAGG CCGGCGACTG GCTGCGCGCA GGCATGCCGC TGCGCGTGGC GGTCAACCTC
TCGGCCCAGC AACTGCGGCA GGCCGACCTG CAGCAGCGCC TCATGGCCAG CCTGGCCCGG
CATGGCGTGC CGCCGCACCT GCTGGAGCTG GAGGTCACCG AGTCCGCTGC CATGACCGAC
CCGCTGCAGG CGCGCGAGCT GCTGGGCAGC CTGCTGGCGG CCGGCGTCTG CGTGGTGCTG
GACGATTTCG GCACCGGCTA CTCCTCGCTG GCCCACCTGC GCGATCTGCC CGTCTCGCGC
GTGAAGATAG ACCGCACCTT CATCGGCCCC ATGCTCGACA GCCCGGCCGA TGCCAAGATC
GTCAAGGCCG TGATCGCGCT GGCCCGAACC CTGGGCCTGC AGGTGGTCGC CGAAGGCGTG
GAAACGGCCG AGCAACTGCG CCTGCTGCGC ATCCTGGACT GCGACGCCTA CCAGGGCTGG
CTCTTCGCCC GCGCCATGCC GGCAGAGCAG ATTCCGCCTC TGTTGCAAAG GCCTGCAGAG
GCGGTGTTGG TGCAGTAA
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| Protein sequence | MMAAGWSMVA GDPAAPGEAL DEDLKRVAME AAPDGILLVD RSGRILLANP AMQAMSGYGA
AELLGHSLQM LLPAEAQAAH GPQLQSYFAQ PARRPMGQGR DLWLLRKDGK RLSVDIALGH
SPHGSGVAVA FVRDLSQLRQ MEACMHYHAT HDTLTGLLNR WQFGLQVEQA ISQAQAQSES
GAGPASFALL LLDLDNFKAI NDGYGHDVGD QVLKEVARRL QAALGGSATL ARMGGDEFTA
LLQPCNEPDL RQRIDALLHE LCRPCTIGHY ALNFGASVGA AFYPQDAGDA ATLMRYADMA
MYDAKQRSRS SYARYASAMG EAMAEKVLLH ERLKRALDRG LLSLHFQPQV QVLGGQVQGV
EALLRWNDEQ MGWVSPERFV PVAESTGLIL ALGEWVIDAA CRQAGDWLRA GMPLRVAVNL
SAQQLRQADL QQRLMASLAR HGVPPHLLEL EVTESAAMTD PLQARELLGS LLAAGVCVVL
DDFGTGYSSL AHLRDLPVSR VKIDRTFIGP MLDSPADAKI VKAVIALART LGLQVVAEGV
ETAEQLRLLR ILDCDAYQGW LFARAMPAEQ IPPLLQRPAE AVLVQ
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