| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1554 |
|---|
| Symbol | |
|---|
| ID | 5747111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 1745751 |
|---|
| End bp | 1747412 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641296635 |
|---|
| Product | protein of unknown function DUF894 DitE |
|---|
| Protein accession | YP_001562583 |
|---|
| Protein GI | 160897001 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCTG ATTCGACCCG GCCCGCAGCC ACTGCCTCCG GCAGCTTCGC GCCGCTGCGC
CAGCCCGTGT TCGCGGTGCT GTGGGCGGCC ACGGTGCTGG GCAACATCGG CAGCTTCATG
CGCGATGTGG CCAGCTCCTG GATGGTGACC GAGCTGTCGG CCAGCCCGGC CGCCGTGGCC
CTGATCCAGA CGGCGGCCAC GCTGCCCATC TTCCTGCTGG CGATTCCGGC CGGCGTGCTG
TCCGACATCC TGGACCGCCG CCGTTTCCTG ATCGGCATCC AGATCCTGCT GGCCGCCGTC
AGCGCCAGCC TGCTGCTGCT GGCACGCACC AACACGCTGA CCGTGGAGTA CCTGGTGGCG
CTGACCTTCG TGGGCGGCAT AGGCGCGGCG CTGATGGGGC CGACCTGGCA GTCCATCGTG
CCCGAGCTGG TGCCGCGCAG CGACCTCAAG AACGCGGTGG CGCTGAACTC GCTGGGCATC
AACATCGCAC GCGCCCTCGG CCCTGCGGCC GGCGGCCTGC TGCTGGCCAG CTTCGGCGCG
GCGGCGGCCT ACGGCGCGGA CGTGGCCAGC TATGTGTTCG TGATCGCCGC GCTGGTCTGG
TGGAAGCGCC CCAAGGCCGA GGCATCGGCC CTGAACGAGC AGTTCTTCGG CGCCTTCCGC
GCAGGCCTGC GCTATGCCCG CTCCAGCCGC GAGCTGCATG TGGTGCTGCT GCGCGCCGCC
GTGTTCTTCC TCTTCGCCAG CTCGGTCTGG GCCCTGCTGC CGCTGGTGGC GCGGCGCATG
CTGGGCGGCT CGGCAGGGTT TTACGGCGTG ATGCTGGGCG CCGTGGGCGC AGGCGCCATC
CTGGGTGCGC TGGTGCTGCC GCGCCTGCGC AAAAGGCTGG ATGCCGATGG CCTGGTGCTG
CTGTCCTCCG TGCTCAGCGC CGCCGTGATG GCTGCGCTGT CCACCGCGCC GCCGCAATGG
GCCGCCGTGC TGCTGATGCT GGTGCTGGGC CTGGGCTGGA TCATTGCGCT GACCACGCTC
AACGGCGTGG CCCAGGCGGT GCTGCCCAAC TGGGTGCGCG GCCGGGGACT GGCCATCTAC
CTGATGGTGT TCAACGGCGC CATGGCGGGC GGCAGCCTGG CCTGGGGGCT GTTCGCGCAG
GGCGTGGGCA TTCCCACGGC GCTGCTGATC GGCGCGGCAG GCCTGGTGGC CATCTCGCTG
GTGTTCCACC GCATCAAGCT GCCCACGGGC GAGGCGGACC TGCAGGCCTC CAACCACTGG
CCCGAGCCGC TGCTGGCCGA GCCCGTGGCC CATGACCGTG GCCCGGTGAT GATCCAGGTG
GAGTACCAGG TGCGCCGCGA CGACCTGCCA GCCTTCATCG AGGCCATGCA GCATGTCGCA
CGCGAACGCC GCCGCGATGG CGCCTATGCC TGGGGCATTG CCGAGCACAC GGGCGAGCCG
GGCCGGGTGA TCGAGTGGTT CCTGGTGGAG TCCTGGGCCG AGCATCTGCG CCAGCACCAG
CGCGTGTCCA GGGCCGATGC CGATCTGCAG GCCCAGGCGC TGCGCTTTCA CATCGGCCCC
GGGCGGCCCG TGGTCCACCA CTTCCTGGCG CTGGATGCCG CCAGTGCCGC CAGTGCCGCG
AGCGGGCATG CGCAGGTACC GGCGCACGGC CACGCCCACT GA
|
|---|
| Protein sequence | MTADSTRPAA TASGSFAPLR QPVFAVLWAA TVLGNIGSFM RDVASSWMVT ELSASPAAVA
LIQTAATLPI FLLAIPAGVL SDILDRRRFL IGIQILLAAV SASLLLLART NTLTVEYLVA
LTFVGGIGAA LMGPTWQSIV PELVPRSDLK NAVALNSLGI NIARALGPAA GGLLLASFGA
AAAYGADVAS YVFVIAALVW WKRPKAEASA LNEQFFGAFR AGLRYARSSR ELHVVLLRAA
VFFLFASSVW ALLPLVARRM LGGSAGFYGV MLGAVGAGAI LGALVLPRLR KRLDADGLVL
LSSVLSAAVM AALSTAPPQW AAVLLMLVLG LGWIIALTTL NGVAQAVLPN WVRGRGLAIY
LMVFNGAMAG GSLAWGLFAQ GVGIPTALLI GAAGLVAISL VFHRIKLPTG EADLQASNHW
PEPLLAEPVA HDRGPVMIQV EYQVRRDDLP AFIEAMQHVA RERRRDGAYA WGIAEHTGEP
GRVIEWFLVE SWAEHLRQHQ RVSRADADLQ AQALRFHIGP GRPVVHHFLA LDAASAASAA
SGHAQVPAHG HAH
|
|---|
| |