| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1451 |
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| Symbol | |
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| ID | 5747007 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 1624255 |
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| End bp | 1624998 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641296531 |
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| Product | RNA-binding S4 domain-containing protein |
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| Protein accession | YP_001562480 |
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| Protein GI | 160896898 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.28914 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTGAAT CTGAAAGCGT TCGCCTGGCC AAGCGCCTGG CCGAACAGGA ACAATGCTCG
CGCCGCGAGG CCGAACTGCA TATCACCGCC GGCAACGTCC AGGTGGACGG CAAGGTCGTG
CAACTGCCCG AGACGCGCGT GCGCCCCGAG CAGCAGGTCA CGCTGCGCAG CGGCGCCCAG
CCCGAGGCCG TGCCGCCCGT CACCCTGCTG ATGAACAAGC CTGCGGGCTA CACCCAGGGC
CGGCCCTATG GCCGGGTGCG CAGCGCGCAC TCCCTGCTGG GCGAAGCCAG CATGGCCCAG
GTGGACACGC CCATGCCGCT GCTGGTGCTG GCCCAGCACT TCAAGAACCT GGAATCCTTC
CTGCCCCTGC CGCTGCCGGC CAGCGGCCTC ATCGTCTACA CCCAGGACAA GCGCGTGGCG
CGCAAGCTGG GCGAGGAAGG CATGTGGCTG GAGCAGGAAT GCATCGTCGG CGTCGAGGGC
CAGATCCACG AGGACGGTCT GGAGCTGATG AAGGCCGGCC TGCCGATCGG CAAGCGCCAG
CTGCCGCCCT GCCGCGTGAG CTGGCAGAAC GAGAACCATC TGCGCTTTGC GCTCAAGGGC
ATCGCCCCCG ACGAGATCGA CGCCATGTGC ACCGAAGTGG GCCTGCGCGT GGTCAGCCTG
CGCCGCCTGC GCATTGGCCG CCTCTCTCTG GCCAAGGTGC CCGAAGGCCA GTGGCGCTAC
CTGATGCCCT GGGAGCGGTT CTAG
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| Protein sequence | MSESESVRLA KRLAEQEQCS RREAELHITA GNVQVDGKVV QLPETRVRPE QQVTLRSGAQ
PEAVPPVTLL MNKPAGYTQG RPYGRVRSAH SLLGEASMAQ VDTPMPLLVL AQHFKNLESF
LPLPLPASGL IVYTQDKRVA RKLGEEGMWL EQECIVGVEG QIHEDGLELM KAGLPIGKRQ
LPPCRVSWQN ENHLRFALKG IAPDEIDAMC TEVGLRVVSL RRLRIGRLSL AKVPEGQWRY
LMPWERF
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