| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1424 |
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| Symbol | |
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| ID | 5746979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 1586619 |
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| End bp | 1592804 |
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| Gene Length | 6186 bp |
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| Protein Length | 2061 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641296503 |
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| Product | adhesin |
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| Protein accession | YP_001562453 |
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| Protein GI | 160896871 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01731] adhesin HecA family 20-residue repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.872326 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCGACG ACATCACCAT CGACGGCGCG CTGGGCAACC AGGGCGGCAG CGTCTATGCC
CAGGGCAGCC TGGGCGTCTC GGGCAGCACC AGCAACAGCG GCAACATTGC CGCCAGCACC
ATCACCATGG CCGCCGTGGA CAACAGCGGC CAGATCGGTG CGCAGGGCAT CTCACTGGGC
GCCACCGGCA ACTCGGGCAG CATCTCCGGC TCCAGCGTGG GCATAGATGG CAGCCTGAGC
AACAGCGGCA GCATAGGCGC CAGCGGCTCG CTCGGCGTCT ATGGCGGCTC CATCTCCAAC
AGCGGCTCCC TGGCGGGCGG CGACGTCACC CTCAGCGGCA GCAGCATAGG CAACGATGGA
CAGATCCAGT CCTCGGGCTC CCTGAGCATC TCGGGCGGCA GCTTCGACAA CGGGCTGACC
GAATCGCGCA GCTGCGTCTC GGCCAGCGGC TGCGGCGCGG GCTCCGCCCC CGAAGACTGG
CGCTACAGCC AGAACCCGGG CGCCGTGCAT GCGGGCGGCG CGCTCACCGT CAACGTCGGC
AGCATGACCA ACAAGGGCGT GGTCAGCGCA GGCAGCAGCG TCAATATCCA GGGCAGCCTC
AACAACACGC GCAGCGTCAA CGACCCCTAC ACTTCCGCAG GCGCCAGTGG TGGCGCCAGC
ACCGGCATCA TCTCGGCCGG TGGCGACCTC ACCATCTCGG GCCCCTCCGT GCAGAACGCG
GGCGGGCAGA TGCAGGCAGG CGGCGCCGTC AACATCACAT CGGCCGGTGC CTTCAGCAAT
GGCGCCCCTG CCGAAGGGGT GACCGGCCAG ATCCAGGGCA GCAGCGTCAC CATCAACGCC
GCCAGCATCG ACAACCAGGG CACGCTGCTG GCCAAGAGCG GCGATGCGAA GCTCACCGCC
AGCGCCGGCG GCATTGCCAA CACCGGCACG GTGGCCGCCA GCGGTGGCCT GCAACTGCAG
GCCAGCGGCG CGGTCAGCAA CGGCGACGGT GCCAACCTGC TGGGCCAGGA CATCCGCATC
AAGGGCTCGG GTTTCAGCAA CCAGGGCACG GTCTATGGCC AGGGCGGCGC GCCCGGCGAG
ATCGACATCA ACACCACGGG CGGCTTCAGC AACAGCGGCG GCACCCTTGT CGCGGGCGGC
AAGCTCAACA TCCAGTCTGG CGGCTACAGC AACAGCGGCG GCACCGTGGG CAGCCTGGGC
GACGTCACCC TCACCATGGC CGGCGCCTAT GGAGCCACCG GCAACGAACT GCTGGCCCTG
GGCCACCTTC AGCTCAACGT GGGCGGCATC AACGTGGGCG CCTCGGAAAG CTGGTCCTAT
GGCGGCAACT CCGTGGCCTG GACCGGCACC CTGCACAACC AGGGCAGCGT CGCCATCGCC
GGCAGCGCCA AAGGCAGCAT CCACAACGAA GCCACGGGCA CCCGCAGCGG CAGTGGCGAG
CCCGATGTGC GCGACGGCAC CTACGAGGTG CCCGACTACC CGGCCGCGCT GGCCGACCTC
AAGGAAGTGC GCGTCGTCGG CTACACCGAC GTGGCGCAGC GCGCGCAGCT GTACATCGGC
GGCGGCTTCG ACGGCTCGCT GGTCAATGAG GCCTCGGACG CCAGCGTGGG TGGCGGCAGC
ATCGAGCAGC GCAAGAAGAA CCAGACCATC ACCTGGGAGG GCAAGAACGC CGACGGGGAC
ATCGTCACCG TCGAAGGCCT GGCCCGCAGC GTGCCGCGCC TGAACACCGG CAGCGGCAGC
TCCACCATCA CTCTGGTCGG GCCCGATACC GGCACCATCG TCGGCGATGC CATCACCATC
AATGGCGGCA CCATCACCGT ACGGCCCGGC ATTGATCCCG CCACGGGCCT GCCCCTGGTC
GTGGAAGCCC GCAACCGCGA GGTCAAGCCC GGCGACGTGG CCAAGGGCCC CGACGGCCAG
GCCGTCAAGG GCGACGTCAA GACCGGCGAT GCCGGCAAGG CCGACGCGCC CAGGGAATTC
AAGGTCCTGG GCGGCGACCC CGGCAGCATC GGCGCCGGCG ACACCAAGGG CCAGGGCAGC
GATATCAAGG GCCCGGGCGA CGAAGGCCTG CCGCCCCGGA CCTCCAGGCC GCTGGACCTC
TCGCGCCCTG AACTGGCCAC GCCCGAAGGC GGCGTGGCCG CCCTGCTGGG TGGCGGCAAG
AGCGTGGCCT GGCCCGACTG GAAGCAGATG CAGATCGTGC CCGGCGGCAT CAGCGCCAAC
GACCTGGAAC TCAACCTCAA CGGCCAGTTC ATCAACCGGG GCCAGCTCGA AGTCACCAAC
AACCTGGCCA TACGCGCCGC CGAAGGCATA GACAACTTCG GCGCCAGCAT TCGCGCGGGC
GGCTACACCA GCCTCAGCGG CGGTGGCCTC GACAACAGGG ACGGCAGGAT AGAGACCGGC
ACCCTGCTGA CCTCCCTCAA GGGCGACATC GACAACAGCC GCGGCAGCAT CGTCGCGCAT
GACGGCGGCT ACCTGCAGGC CAGCGGCAAT ATCGCCGCCA CCGATGGCCG CTTCGTCAGC
GACGCGGGCA AGATCGTGCT GGACGCGGGC GGCAACATCG ACCTGGTCGC CAGCAAGGTC
GAGGGCAAGA AGGGCGCGGG CCTGTATGCC GACGGCGACA TCCGCCTGGG CGCCACCGCC
AAGGCCGAAA GCACGCACAA GAAAGAGGAC CAGATCCTCG TCACCCATCA CTACGACGCG
GACAACAACC TCACGGACCC CGAGATCCGC ATCAAGATCG GCGAAACCCA GCGGCGCACC
GACACCCTGA CCCACACCGG CACCACCATC GACGGCGGCG AAGGCGGCGT CACGCTGCGG
GCCAAGGGCG ACGTGGTGGC CCTGGGCTCG CACATCAAGG CCGGTGAGGA CGTTCTGGTG
CAAGGCGCCA GCGTGCGCGT CGAAGCCCTG GTGGACAAGT CCAGCAGCCT GGAGGAAGAG
CACCGCAAGA ACTACGACCA TGCGCTGTTC CAGCGCAGCG AATCCCTGTC GGGCGGAGAA
ATAGAGGCAG GCCGCAACCT GAGCATCGTG GCGAACGGCA AGGCCGACGC CGGCAAGGGC
GACATCACCC TCAAGGGCGC CACCGTCACC GCCAAGGGCG ACGCCAGCCT CATCGCCAGC
CGCGACGTCA ACCTGCAGGA CATGCAGACC GAGCACGGCC GCTTCGAGGA AACCTACAGC
AAGAAAAGCG GCTTCCTGAG CAAGAAGAGC ACGCACACCG TGGAGGAAGG CGCCAGCAGC
CTCAGCGAAG GCAGCGTGCT CGGTGCCAAC AACATCTACC TGCAGGCCGG GCGCGACATC
AGTGTGACCG GCTCGCACGT GGTGGGCCAG GGCGATGTGG GCCTGGTGGC CGGGCGCGAC
GTGCAACTGC TGGCGGGCCA GGACAGCGCC GCCGCCACCA GCCACAGCGA AACCAAGAAA
TCGGGCCTGT TCAGCGGCGG CGGCTTCGGC ATCACGCTGG GCTCCAAGTC CGTCACCATC
GACCGCAGCA ACGAAAGCGT GCGCGCGGCC GGCTCCAGCG TGCAGGCGCA GGGCGGCAAC
GCCTCCATCG TGGCGGGCAA CCAGTACCGC CAGACGGGCT CGGCCGTGCT GGCGCAGGGC
GATGTGAACA TCGTCGGCAA AAGCGTGGAG ATCAACGAGG CGCGCGAGCT GGAGCGCGAC
AAGTTCGAGA TGCGGGCCAA ACAGAGCGGG CTGAGCGTCA GCATCAGCAA CCCCGTGGTC
AATGTCGTGC AAGGCGGCGA GACGGTCGCC CGCATTGCCG GGGCGACCGG CAAGACCAGC
GATGCCCGGA TGCAGGCCCT GGGTGCGGCC GCTGCCGGCA TGGCGGCCTA TGAAACCTAT
GGCAAGGCCA GCCAGCTCAT CGCAGACCCC AGCAGTGCCA CCAGCGTAGG CATCAGCCTC
AGCCTGGGCA AAAGCTCCAG CCGCAGCACC AGCGAATACC AGGTCAACAG CGCCGTAGGC
TCCCTGGTCA AGGCCGACGG CAACGTCAGC ATCACGGCCA CCCAGGGTGA CGTCCACGTG
CGCGGCAGCA GCGTGGAAGC CGGCAAGGAC GTACGCCTGG CTGCGGACAA GGGCAACATC
GTCCTGGAAG CGGCAGAAAA CCGCTTTGCC GAGCAAAACA GCCAAAGCAG CAGCTCGGCC
AGCGTGGGCG TGGCCTTCAC CCTGGGCAGC AAGAACGGCT TCAGCGTCAA TGTGGGGCTC
AGCCAGGGCA AGGGCAGTGG CAGCGGTGAA AGCCTCAGCC ACACCAACAC CCACATCAAG
GCAGGCGGCA CGGCCAGCGT GCAAAGCGGC GGCGACACCA CGCTCAAGGG CGCCACCATC
GTGGCCGACA CGGTCAAGGC CGACATAGGC GGCAACCTCG CCATCGAAAG CCTGCAGGAC
AAGAGCACCT ACAACGAGAA AAGCAGCAGC GCCGGCCTCA ACGTCAGCCT GTGCGTGCCT
CCCCTGTGCT ACGGCCCCTC CAGCGTGGGC GGCAGCGCCG GGCGCACGCG CATCGACAGC
GACTACCAGA GCGTGGTCGA GCAAAGCGGC ATCCGCGCTG GCGACGGTGG CTTTGACGTC
AAGGTCAAGG GCGACACCAC GCTCAAGGGC GGCGCCATCA CCAGCACCCA GGTGGCGATG
GACGACGGCA AGAACCGCTT TGAAACGGGC GGCAAGCTGA CCACCAGCGA CATTGAAAAC
CACGCGGCCT ATGACGCCAG CGGCTGGAGC GCAGGCGGCA GCGTGGGCTT CCAGGCAGGC
GACCAGAGCA CAGCCAAGAC GGAAGAACAA AAAAAGGCCG CACTCGACAC AGGCAAGGGC
CTGACGGGCG GCAGTGCCGG CGTGGGCAGC GACAGCGGCA ATGCCAGCAG CACCACCAAG
GCAGGCATCA GCGGCGTGGC GGGTGACAGC GGTGCGCGCA CGGGGGACAA GGAGACGGGC
CTCAAGCCCA TCTTCGACAA GGACAAGGTG CGCGAGAACG TCAATGCGCA GATCGAGATC
ACGCGGGAGT TTGGCAAGCA AGGCAGCGCA GCATGGGGCA ACTACGCCAC CAGGCAATAT
GCCGAAGCAC TGAAGAACCA GGATGCTGAA GCGGCAGAGT GCTGGGGACC CAGCGGCGCA
TGCCGTGCCG TCGGCCATGC GCTGATTGGC GGCGCGACAG GCGGCGTGGG CGGTGCGGCC
GCTGGCGGGT TTACCTCACT GACGGCGCCG CAGGCACAGG CCCTGCTGCG GGGAGCTGGC
TTGCCGGAGC CCGTGGTGGA TGCTCTGGTG CAAGGCTATG CGCTGGGTGC TGGCGCCGGA
ATTGGCGGTG CACCCGGTGC TGCAGCCGGC GCTAATGAAG CGTCAAACAA CGCGGTGGCA
CCCTTTGCCA TAAATGTGTT GCTGGAGGGA GGCGCGCTGG CTTTGGCAGG ATGCTATGCG
CTGCCTGCAT GCGCGAAGAA CATTGCACCG CAGATGGAGC AGTATCTGGC CAGTCTGACC
AAGGAGCAGG TTGCCAGTGC CGTTGGCCAG TCGTGGATGC GCGGATGTGG GCTGATCCCC
ATGTGTACGC TGTCGCTTAT TGCGCAAGGC GTGGATCCTC GGCTATTGGG TGTGCAGGGT
AAGCCGGAAA CGCCTGCTCC AGGGCCGAAC CACACTGGCG GGGATCAGAC TAGGAATCCG
AATCCTGGTG GCGGCACTAC TACGACACCT AATGATGGTC CGAAGGGTGG GTTGGGCCCT
AATGGCAAAC CGATAGCAGA CCCTTCAGAC ACTACAACTG TTACCCCGAT CCCAGAACCG
CAAGGGCCGC AGCTTGTTCT CAGCGAGAAA AAAAATGGGG GTAGCGTCAG TGCTTTGCCC
GGGGCTGCGC CTGGAGTTAA CGAGATAAAA GGGGCTGATG CACTTGCAGA TAACGGTTTT
AATGTGGTTC ATCAGCCGAC TAATTCATCG CAAAATCAGC CAGGACGAAA AGCTGATTAT
TATGTGGAAG GAATCGGGCA AGTTGACGAG TACAGTCCGG ATCCATCTAC GGAGCTGCCT
AATATGGCAC GTGCCATAGA GAAGAAGAAC AAGCAGGGAA ATGGGGTGAT GGTGCAGAAG
GATTTGACTG ATTATGAAAT AGAAATTTTG AGTAACATGG TTTGGAAAAA ACCTAATGCA
AAAAATATTG ATACATTGAT ATTTAATTCA AATGGTAAGC TAAAGGTGCT TAAAAGGCCG
AAATAA
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| Protein sequence | MADDITIDGA LGNQGGSVYA QGSLGVSGST SNSGNIAAST ITMAAVDNSG QIGAQGISLG
ATGNSGSISG SSVGIDGSLS NSGSIGASGS LGVYGGSISN SGSLAGGDVT LSGSSIGNDG
QIQSSGSLSI SGGSFDNGLT ESRSCVSASG CGAGSAPEDW RYSQNPGAVH AGGALTVNVG
SMTNKGVVSA GSSVNIQGSL NNTRSVNDPY TSAGASGGAS TGIISAGGDL TISGPSVQNA
GGQMQAGGAV NITSAGAFSN GAPAEGVTGQ IQGSSVTINA ASIDNQGTLL AKSGDAKLTA
SAGGIANTGT VAASGGLQLQ ASGAVSNGDG ANLLGQDIRI KGSGFSNQGT VYGQGGAPGE
IDINTTGGFS NSGGTLVAGG KLNIQSGGYS NSGGTVGSLG DVTLTMAGAY GATGNELLAL
GHLQLNVGGI NVGASESWSY GGNSVAWTGT LHNQGSVAIA GSAKGSIHNE ATGTRSGSGE
PDVRDGTYEV PDYPAALADL KEVRVVGYTD VAQRAQLYIG GGFDGSLVNE ASDASVGGGS
IEQRKKNQTI TWEGKNADGD IVTVEGLARS VPRLNTGSGS STITLVGPDT GTIVGDAITI
NGGTITVRPG IDPATGLPLV VEARNREVKP GDVAKGPDGQ AVKGDVKTGD AGKADAPREF
KVLGGDPGSI GAGDTKGQGS DIKGPGDEGL PPRTSRPLDL SRPELATPEG GVAALLGGGK
SVAWPDWKQM QIVPGGISAN DLELNLNGQF INRGQLEVTN NLAIRAAEGI DNFGASIRAG
GYTSLSGGGL DNRDGRIETG TLLTSLKGDI DNSRGSIVAH DGGYLQASGN IAATDGRFVS
DAGKIVLDAG GNIDLVASKV EGKKGAGLYA DGDIRLGATA KAESTHKKED QILVTHHYDA
DNNLTDPEIR IKIGETQRRT DTLTHTGTTI DGGEGGVTLR AKGDVVALGS HIKAGEDVLV
QGASVRVEAL VDKSSSLEEE HRKNYDHALF QRSESLSGGE IEAGRNLSIV ANGKADAGKG
DITLKGATVT AKGDASLIAS RDVNLQDMQT EHGRFEETYS KKSGFLSKKS THTVEEGASS
LSEGSVLGAN NIYLQAGRDI SVTGSHVVGQ GDVGLVAGRD VQLLAGQDSA AATSHSETKK
SGLFSGGGFG ITLGSKSVTI DRSNESVRAA GSSVQAQGGN ASIVAGNQYR QTGSAVLAQG
DVNIVGKSVE INEARELERD KFEMRAKQSG LSVSISNPVV NVVQGGETVA RIAGATGKTS
DARMQALGAA AAGMAAYETY GKASQLIADP SSATSVGISL SLGKSSSRST SEYQVNSAVG
SLVKADGNVS ITATQGDVHV RGSSVEAGKD VRLAADKGNI VLEAAENRFA EQNSQSSSSA
SVGVAFTLGS KNGFSVNVGL SQGKGSGSGE SLSHTNTHIK AGGTASVQSG GDTTLKGATI
VADTVKADIG GNLAIESLQD KSTYNEKSSS AGLNVSLCVP PLCYGPSSVG GSAGRTRIDS
DYQSVVEQSG IRAGDGGFDV KVKGDTTLKG GAITSTQVAM DDGKNRFETG GKLTTSDIEN
HAAYDASGWS AGGSVGFQAG DQSTAKTEEQ KKAALDTGKG LTGGSAGVGS DSGNASSTTK
AGISGVAGDS GARTGDKETG LKPIFDKDKV RENVNAQIEI TREFGKQGSA AWGNYATRQY
AEALKNQDAE AAECWGPSGA CRAVGHALIG GATGGVGGAA AGGFTSLTAP QAQALLRGAG
LPEPVVDALV QGYALGAGAG IGGAPGAAAG ANEASNNAVA PFAINVLLEG GALALAGCYA
LPACAKNIAP QMEQYLASLT KEQVASAVGQ SWMRGCGLIP MCTLSLIAQG VDPRLLGVQG
KPETPAPGPN HTGGDQTRNP NPGGGTTTTP NDGPKGGLGP NGKPIADPSD TTTVTPIPEP
QGPQLVLSEK KNGGSVSALP GAAPGVNEIK GADALADNGF NVVHQPTNSS QNQPGRKADY
YVEGIGQVDE YSPDPSTELP NMARAIEKKN KQGNGVMVQK DLTDYEIEIL SNMVWKKPNA
KNIDTLIFNS NGKLKVLKRP K
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