Gene Daci_1362 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_1362 
Symbol 
ID5746917 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp1516939 
End bp1517484 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content67% 
IMG OID641296441 
Producttripartite ATP-independent periplasmic transporter DctQ 
Protein accessionYP_001562391 
Protein GI160896809 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones54 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATCCC CTCCCACCGA AAACGGCGCC GCTGAGACGC CTTCGCAGCC GGACGAGCCG 
CGTTCGCTGC GCATCGAGGA CTGGCTCACC GTGGTGATCA TGGCCCTGCT GGCCCTGATC
ACCTTCGCCA ATGTGCTGGT GCGCTACTTC ACCTCCTCCT CCTTCGCCTG GACCGAGGAA
ATCTCGGTCT TCCTGATGAT CCTGCTGGCC ATGGTCGCGG GCTCGGCGGC CGTGGCGCGC
AACGCCCATA TCCGCATCGA GTACTTCGCC GAAGGCGGCA GCGCCCTGCG CAGGAAGCGC
CTGGCGCGCT TCGGCACGCT GATGGTGGCC CTGCTGTTCG CCGTGATCGC CGCACTGAGC
GTGCGCGTGG TCTGGGACGA CTACCGTTTC GAGGAAACCT CGCCCGGCAT CGGCGTGCCG
CAGTGGTGGT ATTCGATGTG GCTGCCGATT TGCTCGGCCC TGATCACGGT GCGCGCGCTG
CAGCTGTTCC AGCGCCAGGG CCGCCCTGGC GCCTTCGATG ACAGCCCCGG GGAGAAGGCG
CAATGA
 
Protein sequence
MSSPPTENGA AETPSQPDEP RSLRIEDWLT VVIMALLALI TFANVLVRYF TSSSFAWTEE 
ISVFLMILLA MVAGSAAVAR NAHIRIEYFA EGGSALRRKR LARFGTLMVA LLFAVIAALS
VRVVWDDYRF EETSPGIGVP QWWYSMWLPI CSALITVRAL QLFQRQGRPG AFDDSPGEKA
Q