| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1339 |
|---|
| Symbol | |
|---|
| ID | 5746894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 1491736 |
|---|
| End bp | 1494138 |
|---|
| Gene Length | 2403 bp |
|---|
| Protein Length | 800 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641296418 |
|---|
| Product | 3-hydroxyacyl-CoA dehydrogenase NAD-binding |
|---|
| Protein accession | YP_001562368 |
|---|
| Protein GI | 160896786 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCGAT TCAATGTGAA GAAAGTCGCC GTGCTCGGCG CTGGCGTGAT GGGAGCGCAG
ATCGCGGCCC ATCTGGTCAA TGTCAAGGTG CCCGTGGTGC TGTTCGACCT GCCTGCCAAG
GAAGGCCCGA AAAGCGGCAT CGCCGAGCGC GCCATCGCCA ACCTCAAGAA GCTCAAGCCT
TCGCCCATCG GCGTGGCCGA GGACGCGGAC CTGATCCAGC CCGCCAACTA CGAGGAGCAC
CTCAAGCTGC TCAAGGGCTG CGACCTGATC ATCGAGGCCA TTGCCGAGCG CATGGACTGG
AAGCTCGATC TGTACACCAA GATCGCGCCC CATGTGGCCA AGCACGCCAT CGTGGCGTCC
AACACCTCGG GCCTGTCCAT CACCAAGCTG TCCGAGGCGC TGCCCGACGC GATCAAGCCG
CGCTTTTGCG GCATCCACTT CTTCAACCCG CCGCGCTACA TGCCGCTGGT GGAGCTGATC
GCCACGCCGA CCACGCAGCC CGTGGTGCTG GACCAGCTCG AAGCCTTTGT CACCAGCGGC
CTGGGCAAGG GCGTGGTGCG CGCCAAGGAC ACGCCCAACT TCATCGCCAA CCGCATCGGC
ATCGCCGGCA TGCTGGCCAC GATGAAAGAG GTCGAGAACT TCGGACTGAC CTTCGACGTG
GTCGATGACC TCACCGGCAA GAAGCTGGGC CGTGCATCCA GCGGCACCTT CCGCACGGCC
GACGTGGTGG GCCTGGACAC CATGGCCCAT GTGATCAAGA CGCTGCAGGA CAACCTCAGC
GCCGAGACCG ATCCCTTCTA CGGCAGCTTC GGCACGCCGC CCGTGCTGGC CAAGCTGATC
GAGCTGGGCA ACCTGGGCCA GAAGGCGAAG AAGGGCTTCT ACAAGAAGGT CGGCCGCGAC
ATCCTGCAGT TCGAGCTGGA CAGCGAGGAC TACGTGCCCG CAGGTGGCAA GGCCGACGAG
GTCTATGGCC GCATGCTCAA GAAGCCCGCT GCCGAGCGCC TGAAGCTGCT GCGCAATGCC
GAGGGCGCGC AGGGCCGCTT CCTGTGGGCC ATCCTGCGCA ACAGCTTCCA CTACGCGGCC
ATCCACCTGG AGAGCATTGC GGAGTCTGCC CGCGACGTGG ACCAGGCCAT GCGCTGGGGC
TTCGGCATGA AGCAGGGCCC CTTCGAGCTG TGGCAGGAGG CCGGCTGGCT TGAAGTGGCG
AAGATGGTTC AGGAGGACAT CGATGCCGGC AAGGCATTGA GCAAGGCGCC CCTGCCCAAG
TGGGTCTTCG AAGGCCCCGT GGCCGAGGCC GGCGGCGTGC ACACGGCGCA GGGCTCGTGG
AGCCCTGCCA AGGGCCAATT CGTGCCCCGC CGCGTGCTGC CCGTCTACGA ACGCCAGATC
TTCCCCGAGA AGCTGCTGGG CGAAGACAGC CTGCCCGACT GGAAGACGGC TGGCACCACG
ATCGCCGAAT CCAAGGCGCT GCGCACCTGG ACGCTGGACG GCCAGATCCT GATCGCCAGC
ATCAAGAACA AGATGCACGC CATCAGCCCC GAAGTCATGG AAGCGCTGAT GGAAGCCGTG
GACGTGGCCG AGACCGACTT CCAGGGCATG GTCATCTGGT CGGGCGATGC GCCGTTCAGC
GTGGGCGCCG ACCTGGAGGC CACCATGCCG GCCTTCGTGA TCGGCGGCGC AGACGCCATC
GAAAGCGTGG AGCAGGAGCT GCAAAACCTG ATGCTGCGCA TCCGCTACGC CCAGGTGCCC
GTGGTTGCGG CCATCCATGG CATGGCGCTG GGCGGCGGCT GCGAGCTGGC CGTCTACAGC
GCGCGCCGCG TGGCGCACAT GGAGAGCTAC ATCGGCCTGG TGGAAGTCGG CGTGGGCCTG
GTGCCCGGCG CGGGCGGCCT GACCTATATC GCGCGCCGTG CGGCAGAGAA CGCCGCCACC
AGCACGGGCA AGGACCTGCT GCCCTTCCTG ACCGAAGGCT TCACGGCCGC GGCCATGGCC
AAGGTGGGCA CCAGTGCCAT AGAGTCGCGC AAGCTGGGCT ACCTGCTGGA CAGCGACCTC
ATCGTGCCGC ACAAGGACGA GCTGCTCTTC GTCGCCATCA ACGAGGCCAA GTCCATGGCC
GCAGGCGGCT GGCGCGCGCC GCTGCCGCGC AGCTTCCCCG TGGCGGGACG CAGCGGCGTG
GCCACCATCA AGGGCTCGCT GGTCAACATG CGTGACGGCG GCTTCATCAG CGAGTTCGAC
CAGCATGTGG CCAGCCTGAT CGCCAACGTG GTCTGCGGCG GCGATGTGGA TGCGGGCACC
CTGGTGGACG AGGCCTATCT GATGAAGCTC GAACGTAAGG CGTTCTGCCA CCTGATCGGC
CATCCGAAGA CCCATGAACG CATTCTCGGA ATGCTGAACA CCGGCAAGCC CGTCCGCAAT
TGA
|
|---|
| Protein sequence | MSRFNVKKVA VLGAGVMGAQ IAAHLVNVKV PVVLFDLPAK EGPKSGIAER AIANLKKLKP
SPIGVAEDAD LIQPANYEEH LKLLKGCDLI IEAIAERMDW KLDLYTKIAP HVAKHAIVAS
NTSGLSITKL SEALPDAIKP RFCGIHFFNP PRYMPLVELI ATPTTQPVVL DQLEAFVTSG
LGKGVVRAKD TPNFIANRIG IAGMLATMKE VENFGLTFDV VDDLTGKKLG RASSGTFRTA
DVVGLDTMAH VIKTLQDNLS AETDPFYGSF GTPPVLAKLI ELGNLGQKAK KGFYKKVGRD
ILQFELDSED YVPAGGKADE VYGRMLKKPA AERLKLLRNA EGAQGRFLWA ILRNSFHYAA
IHLESIAESA RDVDQAMRWG FGMKQGPFEL WQEAGWLEVA KMVQEDIDAG KALSKAPLPK
WVFEGPVAEA GGVHTAQGSW SPAKGQFVPR RVLPVYERQI FPEKLLGEDS LPDWKTAGTT
IAESKALRTW TLDGQILIAS IKNKMHAISP EVMEALMEAV DVAETDFQGM VIWSGDAPFS
VGADLEATMP AFVIGGADAI ESVEQELQNL MLRIRYAQVP VVAAIHGMAL GGGCELAVYS
ARRVAHMESY IGLVEVGVGL VPGAGGLTYI ARRAAENAAT STGKDLLPFL TEGFTAAAMA
KVGTSAIESR KLGYLLDSDL IVPHKDELLF VAINEAKSMA AGGWRAPLPR SFPVAGRSGV
ATIKGSLVNM RDGGFISEFD QHVASLIANV VCGGDVDAGT LVDEAYLMKL ERKAFCHLIG
HPKTHERILG MLNTGKPVRN
|
|---|
| |