| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1318 |
|---|
| Symbol | |
|---|
| ID | 5746873 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 1465840 |
|---|
| End bp | 1469784 |
|---|
| Gene Length | 3945 bp |
|---|
| Protein Length | 1314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641296397 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_001562347 |
|---|
| Protein GI | 160896765 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1216] Predicted glycosyltransferases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.581884 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.368047 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCATGCA ATCACTGCGG TGGCCGGGAT TATGATGCGC GACAATCTGC CGCCCGGACT
TCCGGGATTT TTTGCGCCTG GCGTGGGCAT GCCCTGCTGC TCTCTGCAGA CCGGCCACGG
TCGACTGGCG CAGATGAATA TGACGGGCGA TCGATCCCTG CCCGGACCGC GCCTGGCACC
TCATTTCCTA TGACCACACC CATTCCCGAT CCCCACGTCT ACCTGCGCAC CGTCGATCTG
AACGAGCGCA CGTCGCTGTC CGTGCTGGCC GGCCATGTCC GGGCCCAGGC GCACATACTG
GATCTGGGCT GCGGCAGCGG CGCGCTGGGC GCCTTTCTCG CCGAGCACAA GCAATGCGTC
TGCGACGGCG TCACCCTGAG CCAGGAAGAG GCCCGCCATG CCGCGCCCTT CTACCGCCAT
GTCCATGTGG CCGACCTGGA GGACTGCGAC CTGGACCAGC TCTTCGGCGA CGCGCGCTAT
GACTACATCG TCTGCGCCGA CGTGCTCGAG CACCTGCGCC AGCCCGAGCG CATCCTGGCT
GCCTGCCGCA AGCGGCTGAC GCCTGAAGGC CGTCTGCTGA TCTCCGTACC CAACGCAGGC
TACAGCGGCC TGGTGGCAGA ACTGCTGCAC GGCGAATTCC GCTACCGCGA AGAAGGCCTG
CTGGACCGCA CCCACCTGCG CTTTTTCACA CGGCGCTCGC TGTCGCGCTT TCTGGCCGAG
CAAGGCTGGC AGGTGGATGA CATCGACACC ATCGAGCGCG CTCTTCCCGA ATCGGAATTC
CGCGTCGCCT ACGACAGCCT GCCCCCGGCC GTTGCCCGCC ACCTGCTGGC CACGCCCGAT
GCACTGGCCT ACCAGTTCAT CGCCAGTGCG GCGCCCGCCG CCCAGGCACT GCCCATCGAG
CCGCCGCTGA ACTACCCACA GGGGCATGCA CTGTTCACGG CCCAGCTCTA TATCGCCCAC
GATGGACGGT ATGAGGAACA CAACAAGCTA TCGACTACAG GAAGCATCGG CCAAGCCCGC
CAGACCCTGC GTTTCCAGTT GCCATCTGAC GGGGCGGCTG TAAGTCATCT TCGACTGGAC
CCTGCTGACC GTCCTGGCTT TGTGCATTTG CACCGGATTT CGCTGGTGGA TACCCACAAT
GGCACAGCTT GGCAATGGAT GCCGAAGGAT ACTGAATCAG CACTACTGGG ACAGCGCCCC
CATCAACAGA TCGCATGGAA TGCGCCCTGC CCTCCCGCAG CCTTCTCGTT GATGCTGCTG
CTGACCGGTG ATGATCCCTG GTTCGAACTG CCCATTCCCT CTTCTATCCT TGAAACGCAT
CCAGGAGCCT CGCTTGAGAT AGAACTGGGC TGGCCCATGT CCGCAGACTA TCTGGCACTC
TCGCAGGTGG TTCGGCCATT GCAGAGCCAG CTTGAGGAGG CAGCCGCCGC ACAGGACCGA
TGGAACCATC AACGCTCCGA GTTGGAGAAA GATATCCAGC ACCGCGACCA AACTATAGGT
CAGCTCAAGC ACCGCAACGC CCTGCTCGAC GAAAGCCACC AAGTACAAAG CCAAGAGCGC
GCACGCTGGC AGCAGGAAGC CAGTCGGGTA CAGCGTGACT TTGCGCAGCT TGTGCAGCAT
CTACACAGTA TCGAAAACTC CACCATATTC CGGGCAACGC GCCCGCTCGT CCACGCAAAG
ATGCGCCTTG ATCGACTTTT GGGCCGCAAA CCGGTAGCGG CGGCTGTCCG TACACCCGTA
CCACAGACGA TTCCCGACCT CCCCGTAGAT GTGATTGTTC CCGTCTACCG AGGACTGGAT
GACACGCGCG GCTGCATCGA ATCCGTGCTG GCCAGTCAGT GCCGAACGCC ATGGCAGCTG
ATCGTCATCA ATGACGCCAG CCCGGAGCCA GGCGTCACAC AATGGCTGCG TGAACGCGCG
GCGCAGGACA AACGCATCAC TTTGCTGGAG AACGAGGAGA ACCTCGGCTT CGTCGGTACC
GTCAACCGGG GCATGGCGCT GAACACCGCC CATGACGTGC TGCTGCTCAA CAGCGACACC
GTGGTCGCCA ATGACTGGCT GGACCGCATC CGCCAGGCTG CCTACGGCGA TGCACGCATC
GCCTCCGTCA CGCCGTTTTC CAACAACGCC ACCATCTGCA GCTATCCGCG CTTTTGCGAG
GGCAACGATC TGCCGCCCGG CCTGGACACC GCCGCCATCG ACGCACTGTG CGCGCGCACC
AACCCCGGCC AGGTGGTGGA CGTGCCCACC GGCGTGGGCT TTTGCATGTA CATCCGCCGC
GACAGCCTGA ACGCCGTCGG CCTGTTCGAT ACCGAGCACT TCGGCAAGGG CTATGGCGAG
GAAAACGACT TCTGCCAGCG TGCCGCAGCC GCTGGCTGGC GCAACCTGCA TCTGCTGGAC
ACCTTCGTGC TGCACACAGG CGGCGTGAGC TTCGGAGAGA GCAAGAGCCC GCGCGAACGT
GCTGCCATGG AAACCCTGCG CCGCCTGCAT CCGCGCTACG AAGCCGATGT CATGGCCTTC
GTCCAGGCCG ACCCTGCGCG CACCGCGCGC CTTGCGCTGG ACGTGGCACG CCTGCAGGCA
CAAGCCGCAC ACCAGCCTGT GGTGCTGGCC GTGCTCCACG ACCGGGCGGG CGGCACGGTG
CGCCATGTGC GCGAACTGGC GCAGTTCCTG CAAGGCAAGG CGCTGTTCCT CATGCTCTCG
CCAGCCGCAG GTGGCACCGT GGTATTGCGC CGTGCCGAGG AGAAGGAGGC ATTCGAGCTC
GCCTTCCGCA TCAACGACCA GATGGAGGAG CTGGTGCAGG CCCTGCGCCA ACTGGGCGTG
GTGCACGTGC ACTACCAGCA TCTCCTGGGC CACAGCGAAG CCATCCTTGA CCTGCCAGCA
CGCCTGGGAG CTGCCCATGA CTTCACGGCC CATGATTTCT ATACCTACTG CAAGAACATC
TCGCTGACCG GCATAGACAA CCGCTACGTC GTTCCGCTCC GCGCGGGCGA GTGCGGCTGC
TGCGAACCCA CGGACACAGC CCCCTACGCC GGCACCGTGG CCCAGTGGCG TCATCGCAAT
GCGCTGCTGC TGAACAACGC TCGCCATGTG CTGGCCCCCA GCCAGGACAC GGCCAGCCGG
ATTGCCGGTT TCGTGCCCGG TGCCCGCGTC CAGGCGGTTG CCCACACCGA CCTGCCGGCA
CAGCTGCCGG CCCCGGTGGC ACACCCGCTG GCCGCCACGG CTCCGCTCAA GATCGTCGTA
CTGGGAGCCA TGAGCGCCAT CAAGGGCGCC GACGTACTGG AAGCCGTGGC GATCGAAGCA
GCCAAGCGGG GAGCTCCTGT GGAATTCCAT CTGCTCGGCT ATGGCTACCG CAGCCTACAG
ACACAACCGC GTGCACGTCT TACCGTACAC GGAAGCTACG AGGAGCATGA GCTGGTCCAG
TTACTGGAAT GGTTGCAGCC TGACCTAGCC TGGTTCCCAG CTCAATGGCC CGAAACCTAC
AGCTATACCT TGAGCGCGTG CTTGGCAGCG GGCCTTCCCA TCGTCGCACC AGATATCGGT
GCATTCCCGG AACGGCTCGC CGGCCGCTCC TGGTCCTGGA TTCGTCCCTG GGATGCCAGC
GCCTCGCAAT GGCTGGAGTT CTTTGTCCAG GTTCGCGAGC ACAATTTCCT TACAGGGCAA
TCGCCAGAAC GAACATCTGC CACCGAGCAA TCCGTCGCCC ATTCAGGCAA TGCCTTCTAT
GGCGACAGCT ATCTTCGAGG CGTGCACGCC CGCAGCGAAG CCGTGCAACA CCCCCTGGAC
GTCGCCTTTC TTGCCGCTCA CAGCCTGCAG CGGAAAAACC ATGCTGCTCA GACATGGGCT
CTGACAGCGC TCGCCCATCT GCGAGCACTG CCCATGCTGC GCGAGATCGC CAGACGCATC
CCCGCGCATT GGCAGCGGCG AGTGAAAAAC TGGCTTCAGG CTTGA
|
|---|
| Protein sequence | MPCNHCGGRD YDARQSAART SGIFCAWRGH ALLLSADRPR STGADEYDGR SIPARTAPGT
SFPMTTPIPD PHVYLRTVDL NERTSLSVLA GHVRAQAHIL DLGCGSGALG AFLAEHKQCV
CDGVTLSQEE ARHAAPFYRH VHVADLEDCD LDQLFGDARY DYIVCADVLE HLRQPERILA
ACRKRLTPEG RLLISVPNAG YSGLVAELLH GEFRYREEGL LDRTHLRFFT RRSLSRFLAE
QGWQVDDIDT IERALPESEF RVAYDSLPPA VARHLLATPD ALAYQFIASA APAAQALPIE
PPLNYPQGHA LFTAQLYIAH DGRYEEHNKL STTGSIGQAR QTLRFQLPSD GAAVSHLRLD
PADRPGFVHL HRISLVDTHN GTAWQWMPKD TESALLGQRP HQQIAWNAPC PPAAFSLMLL
LTGDDPWFEL PIPSSILETH PGASLEIELG WPMSADYLAL SQVVRPLQSQ LEEAAAAQDR
WNHQRSELEK DIQHRDQTIG QLKHRNALLD ESHQVQSQER ARWQQEASRV QRDFAQLVQH
LHSIENSTIF RATRPLVHAK MRLDRLLGRK PVAAAVRTPV PQTIPDLPVD VIVPVYRGLD
DTRGCIESVL ASQCRTPWQL IVINDASPEP GVTQWLRERA AQDKRITLLE NEENLGFVGT
VNRGMALNTA HDVLLLNSDT VVANDWLDRI RQAAYGDARI ASVTPFSNNA TICSYPRFCE
GNDLPPGLDT AAIDALCART NPGQVVDVPT GVGFCMYIRR DSLNAVGLFD TEHFGKGYGE
ENDFCQRAAA AGWRNLHLLD TFVLHTGGVS FGESKSPRER AAMETLRRLH PRYEADVMAF
VQADPARTAR LALDVARLQA QAAHQPVVLA VLHDRAGGTV RHVRELAQFL QGKALFLMLS
PAAGGTVVLR RAEEKEAFEL AFRINDQMEE LVQALRQLGV VHVHYQHLLG HSEAILDLPA
RLGAAHDFTA HDFYTYCKNI SLTGIDNRYV VPLRAGECGC CEPTDTAPYA GTVAQWRHRN
ALLLNNARHV LAPSQDTASR IAGFVPGARV QAVAHTDLPA QLPAPVAHPL AATAPLKIVV
LGAMSAIKGA DVLEAVAIEA AKRGAPVEFH LLGYGYRSLQ TQPRARLTVH GSYEEHELVQ
LLEWLQPDLA WFPAQWPETY SYTLSACLAA GLPIVAPDIG AFPERLAGRS WSWIRPWDAS
ASQWLEFFVQ VREHNFLTGQ SPERTSATEQ SVAHSGNAFY GDSYLRGVHA RSEAVQHPLD
VAFLAAHSLQ RKNHAAQTWA LTALAHLRAL PMLREIARRI PAHWQRRVKN WLQA
|
|---|
| |