| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1262 |
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| Symbol | |
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| ID | 5746817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 1404100 |
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| End bp | 1406079 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641296341 |
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| Product | lytic transglycosylase catalytic |
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| Protein accession | YP_001562291 |
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| Protein GI | 160896709 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACTGGC TGAAGATTTT GACACCGCTT TTGGCGGCTT CCCTCTGGAC CACCGCAGCC
ACGCCTGCGC TGGCGCAAAA CCGTGGCGAC GATGTCTTGC TGGAAATGCA GCAGGCCTTC
CGCAAAGGCG ACAAGGCCAA GCTCACGCAG CTGCTGCCTT CTGCGCGTGG CCATGTGCTC
GAACCTTGGG CCGCGTACTG GGAACTCAAG GCCCGGCTGG ATGAAGCCAG TGCCGATGAG
ATTCTGGGGT TTTTCAAGCG CTGGCCCGGC ACCTACCAGG AAGACCGGCT GCGCAACGAC
TGGCTGCTGC TGCTGGGGCA GCGCCGCGAC TGGGGCATGT TCGATCAGGT GCACGGTGCG
TTTCGCATGC GCGATGACCG CTCCGTGAGC TGCTACGCCC TGCTGATCGA CAGCATCAAG
GGCCAGCCTG CGGCCAACCT GGGCCAGCAG GTGCGCGACC TGTGGTGGGC CCAGCGCGAC
GCCGACGACG GCTGCACCTA CGCCGCCGGC GAGCTGTACG CGGCCAAGCA GATCAGCGAA
CCCGAAGTCT GGCGCAAGGC GCGCCAGGCG GCCGAGGCCA ATCGCCAGAA GGCCACGCGC
GATGCCGTGG CCATCGTCGC TCCCGAGGCC TTGCCCCAGG TGGCGCAGGT CTTTGCTTCG
CCCGCCAAGT ACCTGGCCGG GCAGACGCGC GTGCGTGGTG CCGTGCCCAA GGAACTGGCG
CTGCTGGCGT TGATCCGCAT GGCCTCCAGC GACCCGGCGG CGGCGGCCAC GCAGCTGGAA
GGCGGCTGGG GTGCCCGGCT GACGGCCGAG GAGAACAACT GGGCCTGGGG TGTGATCGGC
AAGCAGGCCG CGCTCAAGCT GCAGCCCGAG GCGGCGACCT ATTTCGGCAA GGTGCGCAAG
GACGGCGACC TCAGCGATGA ACTGCTGGGC TGGAAGGTGC GCGCCGCGCT GCGCGCCGGC
GACTGGCGCA CGGTGCGCCG CGCCATCGAC GCCATGGGGC CCGAGCGCAC CGAACACACA
TGGACCTACT GGAAGGCGCG CGCCCTGCTG TCCGGCCGAC CGAGCGAGCA GGAACGCTCC
GAGGCGCGCC AGCTGCTGGA GGACATGGCC GGCCCCGGCA GCTTCTACGA GCAGCTGGCG
CTGGAGGATA TCGGCCAGCG CGTGACGGCG CCACCGCCGC CTGCGCCGCC CACGGCACAG
GAGAAGGCCG CCGCCCGCGC CAACCCCAGC CTGGTGCGCG GCCTCTACGC CATCCAGAAC
GGCCTGCGCA GCGAAGGCGT GCGCGAATGG AACTACGCCA CCAACCTGCA CCAGGCCGGC
GGCATGAGCG ACCGCGAACT GCTGGCCGCC GCCGACCTTG CCTGCCAGCA GCAGGTCTGG
GACCGCTGCA TCAACACCAG CGAGCGCACC CGCAGCTTTG CCGACTGGAG CCAGCGCTTT
CCCATGCCCT TCCACGATAC GGTGCTGGCG CGCTCGCGCT CCATCGGCCT GGACCCGGCC
TACGTCTACG GCCTGATCCG CCAGGAAAGC CGCTTCATCA TGGATGCCCG CTCGGGCGTG
GGCGCCTCGG GCCTGATGCA GGTCATGCCG GCCACGGCCC GCTGGACGGC GCGCAAGATC
GGCATGACGG ACTTTTCCCC GTCCATGATC AATGACCGCG AGGTGAACAT CACCATCGGT
ACCGCCTATC TGAAGCTGGC GCTGGACGAT TTCGACGGTT CCATGGCGCT CGCTGCGGCC
GGCTACAACG CAGGTCCCGG CCGCCCGCGC AACTGGCGCA ACGGCCCGGT GCTCGACGCC
GCCATCTGGG CCGAGAACGT GCCCTTCACC GAGACGCGCG ACTATGTGAA GAAGGTGCTG
TCCAACACCA CCAACTACGC GGCGCTCATC ACCGGCCAGC CCCAGTCGCT CAAGAGCCGC
CTGGGAACCA TCGGCCCCCG CGACGCAGCC ACGCCCGACC CCAGCAAGGA CCTGCCCTGA
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| Protein sequence | MHWLKILTPL LAASLWTTAA TPALAQNRGD DVLLEMQQAF RKGDKAKLTQ LLPSARGHVL
EPWAAYWELK ARLDEASADE ILGFFKRWPG TYQEDRLRND WLLLLGQRRD WGMFDQVHGA
FRMRDDRSVS CYALLIDSIK GQPAANLGQQ VRDLWWAQRD ADDGCTYAAG ELYAAKQISE
PEVWRKARQA AEANRQKATR DAVAIVAPEA LPQVAQVFAS PAKYLAGQTR VRGAVPKELA
LLALIRMASS DPAAAATQLE GGWGARLTAE ENNWAWGVIG KQAALKLQPE AATYFGKVRK
DGDLSDELLG WKVRAALRAG DWRTVRRAID AMGPERTEHT WTYWKARALL SGRPSEQERS
EARQLLEDMA GPGSFYEQLA LEDIGQRVTA PPPPAPPTAQ EKAAARANPS LVRGLYAIQN
GLRSEGVREW NYATNLHQAG GMSDRELLAA ADLACQQQVW DRCINTSERT RSFADWSQRF
PMPFHDTVLA RSRSIGLDPA YVYGLIRQES RFIMDARSGV GASGLMQVMP ATARWTARKI
GMTDFSPSMI NDREVNITIG TAYLKLALDD FDGSMALAAA GYNAGPGRPR NWRNGPVLDA
AIWAENVPFT ETRDYVKKVL SNTTNYAALI TGQPQSLKSR LGTIGPRDAA TPDPSKDLP
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