| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1202 |
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| Symbol | |
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| ID | 5746757 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 1337190 |
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| End bp | 1339268 |
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| Gene Length | 2079 bp |
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| Protein Length | 692 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641296282 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001562232 |
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| Protein GI | 160896650 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGAGA ACGTCGATGC GCAAATCACG GGGCCCAACG ATACGCTGCT GCGGCTGATA
GCAGATACGG CTCCGGCCAT GCTGGCCTAC TTCGATGCGC GCACGCTGCG CTGCCGCTTC
GCCAACATCA ACTACGCACG CAATTTCGGA TTGACGCCCG CCGAGGCGAT CGGCAAGACC
GTGCGCGAGA TCGTGGGCGA AGCCGTGTGG CAGCTCATCG CCGAGCATGT GGAGCGCGGC
CTGCGCGGCG AACATGTGCG CTACGAGCGC GAGGTGCCAC AGCCGGATGG ACCGCCTCGC
CATATCGAAT CGCTGCTGAT GCCGCATTTC GAGCACGGGC AGCTGCAGGG CGCCGTGGTG
CAGATCACCG ACGTGAGCCA TCACCACCAT GTGGCGCAGA AGGTGCGCGA CAGCGAAGAG
CGCATGCGCA AGTTCACCGA GGTCACGACC GAGGCCATCG TCATGCACCG CGACGGCCTG
ATCATCGACG GCAACGAGGC CCTGTCCCGC CTGGCCGGCT ACACGCTGGA CGAGCTGACC
GGCCGCCCCA TTCTCGACTA CATCTGCCCC GAGTTCCGCC TCTACGCGCT GCAGTACATG
CGCAGCGGCC GCGAGGACCG CTTCGACGGC GCCATCCAGC ACAAGGACGG CCACCGCATC
CCAGTGGAGA TCGAGGCCAA GACCATGCCG GCCGAGGGCG AGCCCTACCG CATCGTGCTG
GTGCGCGACA TCACGCTGCG CCAGCTGGCG CAGGAGCGCA TGGACTTCCT GGCCCAGCAC
GACCAGCTCA CCCAGCTGCC CAACCGCGTG CGCCTGATCC AGATGCTGCG CCAGGCGCTG
TCGCTGGCTT CGGTCAAGCG GCGCGCCCTG GCCGTGCTCA TCATCGACCT GGACCACTTC
AAGACCATCA ACGACTCGCT GGGCCATCAG GCCGGCGACC TGCTGCTGTG CGAGGTCGCC
CAGCGCCTGC GCGGCAGCGT GCGTGCCCAC GACCTGGTGG CGCGCGTGGG CGGCGACGAG
TTCGTGGTCG TGCTCACCGA CGACCCCGAT CCGCAGGAAA CCGAGACACA GGCCAGCCAC
CTGCAGCGCA TCATCGAGGC GCCCTGCGCC ATCGATGGCA CGCCGCTGGT GATCTCGCCT
TGCATGGGCA TCGCCATGTA CCCCGGCGAC GGGAAAAACG CCGAAGAGCT GCTCAACCGC
GCCGAAAGCG CCATGCACAT GGCCAAGGAC AGCGGCCGGC GCAACCTGCA GTTCTATGCA
CCCGCCCAGG ACGGCCAGGC CACCCAGGCC CAGATGCTGA TGCAGGAGCA GCAGCTGCGC
GGCGCGCTGG AGCGCGGCGA GTTCGAGCTG TACTACCAGC CCCAGACCTT CACGGCCGAT
GGCCGGCTGG CGGGCTTCGA GGCCCTGGTG CGCTGGCGCC ACCCGCAGCG CGGCCTGGTG
CTGCCCGGCG AGTTCATCGG CTTTGCCGAG GCGCGCGGCC TGATCTCGGC CATAGACCAC
TGGGTGCTGC GCGAGGCCTG CCGCCAGGCG CGCCAGTGGC AGGACGAGGG CCTGGCGCCG
GTGCCGCTGT CCGTGAACCT CTCGGCGTTG GAATTCCGCC AGCGCGACAT GGCGCGCGAA
GTGGCACAGG TGCTGGAGGA AACGGGGCTG GAGGCGCGCT GGCTGCACAT CGAGCTGACC
GAGTCCACGC TGATGCACAC CAGCGGGCAG GTGCAGGACA CCTTGCAGGC GCTGCAGGCC
CTGGGCGTGG GCCTGGCCAT CGACGACTTC GGCACCGGCT ACTCCTCGCT GGCCTACCTG
CGCCGCCACC CGATCAACCA GCTCAAGATA GACCGCTCCT TCATCGCCGA CGTCCCCGAT
AGCGAGGACG ACACGGCCAT CGTCACCGCC ATCGTGCAGA TGGGCCACAG CCTGCACCTG
GACATCGTGG CGGAAGGCGT GGAAACACCT GCCCAATTGG CGCTTTTGCG CGAGCTGGGC
TGCGGCATGA TGCAGGGATA CCTTGTGGCG CCGCCCCTGC CGGCCGAGAG GGCGCGCGCC
TGGCAATTGC ACAACAGTCA TCCAGTCCAA CGACAATAG
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| Protein sequence | MPENVDAQIT GPNDTLLRLI ADTAPAMLAY FDARTLRCRF ANINYARNFG LTPAEAIGKT
VREIVGEAVW QLIAEHVERG LRGEHVRYER EVPQPDGPPR HIESLLMPHF EHGQLQGAVV
QITDVSHHHH VAQKVRDSEE RMRKFTEVTT EAIVMHRDGL IIDGNEALSR LAGYTLDELT
GRPILDYICP EFRLYALQYM RSGREDRFDG AIQHKDGHRI PVEIEAKTMP AEGEPYRIVL
VRDITLRQLA QERMDFLAQH DQLTQLPNRV RLIQMLRQAL SLASVKRRAL AVLIIDLDHF
KTINDSLGHQ AGDLLLCEVA QRLRGSVRAH DLVARVGGDE FVVVLTDDPD PQETETQASH
LQRIIEAPCA IDGTPLVISP CMGIAMYPGD GKNAEELLNR AESAMHMAKD SGRRNLQFYA
PAQDGQATQA QMLMQEQQLR GALERGEFEL YYQPQTFTAD GRLAGFEALV RWRHPQRGLV
LPGEFIGFAE ARGLISAIDH WVLREACRQA RQWQDEGLAP VPLSVNLSAL EFRQRDMARE
VAQVLEETGL EARWLHIELT ESTLMHTSGQ VQDTLQALQA LGVGLAIDDF GTGYSSLAYL
RRHPINQLKI DRSFIADVPD SEDDTAIVTA IVQMGHSLHL DIVAEGVETP AQLALLRELG
CGMMQGYLVA PPLPAERARA WQLHNSHPVQ RQ
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