| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1163 |
|---|
| Symbol | |
|---|
| ID | 5746718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 1293142 |
|---|
| End bp | 1294350 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641296243 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_001562193 |
|---|
| Protein GI | 160896611 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 61 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCGCC AAGGCTATCC GCTGGAGGGT GTGCGCATCC TCGACATGGC CACGGTGCTG
GCCGCCCCCT TCTCGGCCAC CCTGTGCGGC GACCTGGGCG CCGACGTCGT CAAGCTGGAG
TTGCCCGGCG GCGGCGACAC GCTGCGCAGC CTGGCCCCCG TGCACGACGG CCACGCCGTG
TTCTGGAAAA CCGCCAACCG GGGCAAGCAG GGCATCTCGC TGGATGTGCG CAAGGCCGAG
GGCCGCACGC TGTTCCTGCG GCTGATCGAG GATTTCGACG TGCTCGTGGA GAACTTCCGC
ACCGGCACGC TGGACCGCTG GGGGCTGGAC CTGGCCACCT TGCATGCCCG CAACCCGCGC
CTCATCGTGC TGCGCCTGAC GGGCTTCGGC CAGACCGGTC CCTATGCGCG CCGGCCGGGC
TTTGCGCGCA TCTTCGAGGC CATGAGCGGC TTCGCCCACC TCACGGGCGA GGCGGGCGGC
CCGCCCCAGC ACATGAACTA CCCGCTGGGC GATGCCGTGG CCGGCCTGTT CGGCGCCTTC
TCCATCGCGG CCGCACTGGC CGAGCGCAAC GCGCAGCCGC ATGGCGAACA GCGCGGCGTG
GAGATCGACC TGTCGGCCAC CGAAGCCATG CTGCGCCTGC TGGACCCGCT GGCGGCCGAG
TACCAGCTGG GCGGACAGGC ACGCAGCCGC ACGGGATCGT GCGCGGGCTA CACGGCGCCT
TCCAACGTCT ACCGCACGCG CGACGGTGCC TGGCTCACCG TGGTCGCCAC AGGCGATGCC
ATCTTCACGC GCCTGTGCCA GGCCATGGAC CGCGCCGACC TGGCCACCGA CCCGCGCTTT
GCAGACAACG CCGCGCGCAT ACGCCACCTG CTGGCACTGG ATGCGCAGAT CGTGCAATGG
TGCGCAGCCC TGGACTGCGC CCAGGCCACG GCCGCGCTGG CCGCGCACGA CATTCCGTTC
AGCAAGGTCT GCTCGGCCGA GGACGCGCTG CAGGACCCGC ATTTCGCGGA GCGCGGCAGC
TTCATCACCC TGCCCGACCC CGACCTGGGC CCCCTCGCCG CCCCCGCGCC TGTGCCACGC
TTCACGGGCC GCCAGGCCCC TTCGCCCCGC AGCGGCCCGG CCACTGGCCA GGACAATGCA
CGCATCTATG CGGCGCTGGG GCTGGATGCG CAGCAGCAGG AGCGGCTGCG GCGCGAAGGC
GTGATCTGA
|
|---|
| Protein sequence | MQRQGYPLEG VRILDMATVL AAPFSATLCG DLGADVVKLE LPGGGDTLRS LAPVHDGHAV
FWKTANRGKQ GISLDVRKAE GRTLFLRLIE DFDVLVENFR TGTLDRWGLD LATLHARNPR
LIVLRLTGFG QTGPYARRPG FARIFEAMSG FAHLTGEAGG PPQHMNYPLG DAVAGLFGAF
SIAAALAERN AQPHGEQRGV EIDLSATEAM LRLLDPLAAE YQLGGQARSR TGSCAGYTAP
SNVYRTRDGA WLTVVATGDA IFTRLCQAMD RADLATDPRF ADNAARIRHL LALDAQIVQW
CAALDCAQAT AALAAHDIPF SKVCSAEDAL QDPHFAERGS FITLPDPDLG PLAAPAPVPR
FTGRQAPSPR SGPATGQDNA RIYAALGLDA QQQERLRREG VI
|
|---|
| |