Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_1100 |
Symbol | |
ID | 5746655 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 1218214 |
End bp | 1219974 |
Gene Length | 1761 bp |
Protein Length | 586 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641296180 |
Product | putative sigma54 specific transcriptional regulator |
Protein accession | YP_001562130 |
Protein GI | 160896548 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGACAC CACGGGGACA GACCCGTGGC CTGCGCGCCG CTAGAGTGCG TTCACCCCAG CCACTGCCCG CCATGCCCAT GCCCAGCTCC CCCGACCACC GATTCGGCGT TCTCGTCTGG CGGCGCGACT CGCCCGAGCC CGTGGCGCGG CTGGGCCTGG CGCAGGAGCC GCTGCTGCAT GCAGCCGTCA CCGAGGCCCT GGCCCGCGCG CACGGCGACG GGCACAACCC CATCGGCCAT GGCCAGTTGC TGCACGTGGA AACACCGGGC CCGCGCGGCA CGGTGGCCCG CCATGTGGCC GTGGTGCTGG CCGATGCCGA GGGCGAGGTC GCCCTGCTGC GCCCGGCCGA CGAGGCGGCG GCGCTGTTCG ACATGGTGGC CAGCGTGCCC TTCGCCTTCG CCATCCTCAA CATGTTCCTG ACCAACCCGT ACCAGGCGAT CACGGTGGCC GACCATGAAG GGCTGATGCG CTACATCAGC CCCGTGCACG AGAAGTTCTT CGGCCTGGCG CCCGGCACGG CCGCAGGCCG GCGCGCCGAG GACGTGATCC CCAACTCGCG CCTGCCCCAC GTGGTGCGCA GCGGCCGGGC CGAGATCGGC GACCTGCAGC AGCTGGGGCC GGGCGTGAGC CGCATCGTCA ACCGCATGCC GGTCTACGAG GGCGGCGCCG TGGTGGGTGC CGTGGGCCAG GTCAGCTTCA GCGGCGTGGA GGCACTCAAC CGCATGCAGC AGCGGCTGAA CCAGCTGCAT GACGAGGTGC AGCACTACAA GCGCGAACTG AGCCAGTTGC GCGGCGGCGC ACCTACGGCA CAGATGGTGG GCGCCAGCGC CCCCATGCAA AGGCTGGCCC GCGAGATCGA CGCCGTGGCG CGGCTCGATG TGCCCGTGCT CATCCTGGGC GAAAGCGGCA GCGGCAAGGA ACTGGTGGCC CAGGCCCTGC ATGCGCGCGG GCGCGAAGCC GAAGCGCCCC TGGTCAGCCT CAACCTCGCG GCCCTGCCGG CCACGCTGAT CGAGTCCGAG CTGTTCGGCT ACGAGGCCGG CGCCTTCACG GGCGGGCGCA GGCAGGGCCA GCCCGGCAAG CTGGAGCAGG CCGAGGGCGG CACGCTCTTC CTCGACGAAG TGGCCGACAT TCCCATGGAG ATCCAGGTCA AGCTGCTGCG CGTGCTGGAG GACCGCCAGG TGCAGCGCCT GGGCGCGCAC AGCGGCCGGC AGGTGAACTT CCGCATCGTG GCCGCCACGC ACCGCGACCT GCGCGGCCTC ATCGACAGCG GCCGCTTCCG GCTGGACCTG TTCTACCGCC TCAGCGGCGT GGTGCTGCAT GTGCCCGCCC TGCGCCAGCG CCTGGAGGAC ATCCCGGCCC TGGTGCAGCG CTTTGCCCAG TCGTTCTGCG AGCGCAACGG CATTGCGCTG CCGCGCATCG CTCCCGGTGT CATGCCCTAC CTGGCCCGCC AGGCCTGGCC CGGCAATGTG CGCCAGCTGC GACAGCGCGT GGAAGAGGCC CTGGTGTTCT GCGACGGCCA CCTGCTGGGC GTGGACAACT TCGCGCGCCA CGAGGACCCG CTGGCCGGCG CACGACCTTT GCCCGCCGCC GAGCCCGGCA TGCCCTCCAC CGGCGCCGTG GCCCCGCTCA AGGACCAGGA GCGCAACGCC ATCCTCGACG CCATCGCACG CTGCGGCGGC AACAAGAAGC TGGCCGCGCA GGAGCTGGGC ATCTCGCGCT CCTATTTGTA CAAGGTGCTG GGCGCGGCAA GCCAGGGCTG A
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Protein sequence | METPRGQTRG LRAARVRSPQ PLPAMPMPSS PDHRFGVLVW RRDSPEPVAR LGLAQEPLLH AAVTEALARA HGDGHNPIGH GQLLHVETPG PRGTVARHVA VVLADAEGEV ALLRPADEAA ALFDMVASVP FAFAILNMFL TNPYQAITVA DHEGLMRYIS PVHEKFFGLA PGTAAGRRAE DVIPNSRLPH VVRSGRAEIG DLQQLGPGVS RIVNRMPVYE GGAVVGAVGQ VSFSGVEALN RMQQRLNQLH DEVQHYKREL SQLRGGAPTA QMVGASAPMQ RLAREIDAVA RLDVPVLILG ESGSGKELVA QALHARGREA EAPLVSLNLA ALPATLIESE LFGYEAGAFT GGRRQGQPGK LEQAEGGTLF LDEVADIPME IQVKLLRVLE DRQVQRLGAH SGRQVNFRIV AATHRDLRGL IDSGRFRLDL FYRLSGVVLH VPALRQRLED IPALVQRFAQ SFCERNGIAL PRIAPGVMPY LARQAWPGNV RQLRQRVEEA LVFCDGHLLG VDNFARHEDP LAGARPLPAA EPGMPSTGAV APLKDQERNA ILDAIARCGG NKKLAAQELG ISRSYLYKVL GAASQG
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