| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1083 |
|---|
| Symbol | |
|---|
| ID | 5746638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 1198279 |
|---|
| End bp | 1199832 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641296163 |
|---|
| Product | FAD linked oxidase domain-containing protein |
|---|
| Protein accession | YP_001562113 |
|---|
| Protein GI | 160896531 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCCG CCAGCTCCCC AGCCAGCCTC GCTCCCGGCG CCATGGCGTC GGCCGCCGCC
GATGCGGCCC ACCAGCAGCC CACAGTCTCC GAGCGCGCAC GGCGCCAGGC CGAGGTCGTG
GCCGCGCTGG CCCGCCATGT GCCCGCCCAC GCCCTGCTGT GGAATGCCGA GGACACCACG
CCCTATGAAT GCGACGGCCT CACGGCCTAC CGCCAGCGCC CGCTGGTGGT CTGCCTGCCC
GAGACCGAGG CCCAGGTCCA GGCCGTGCTG CGAGCCTGCC ACGCCATCCA GGTGCCCGTG
ATCGCGCGCG GCGCGGGCAC CGGGTTGTCG GGCGGTGCCT TGCCCCATCC CATGGGCGTG
ACGCTGTCGC TGGCCAAGTT CAACAAGATC CTCCAGGTCG ATGCGGCCAG CCGCACGGCC
GTGGTGCAGT GCGGCGTGCG CAACCTGGCC ATCAGCGAGG CCGCCGCGCC CTTCGGCCTG
TACTACGCGC CCGATCCCAG CAGCCAGATC GCCTGCACCA TCGGCGGCAA CGTGGCCGAG
AACTCGGGCG GCGTGCACTG CCTCAAGTAC GGGCTGACGG TGCACAACGT GCTCAAGGTG
CGCGGCTTCA CCGTGGAGGG CGAGCCGGTG GAGTTCGGCT CCACGGCGCT GGACACGCCG
GGCTTCGACC TGCTGGCCAT CCTGGTCGGC AGCGAGGGCA TGCTGGCCGT GACCACCGAA
GTCACCGTGC GCCTGATCCC CAAGCCCCAG CTGGCGCGCT GCATCATGGC CAGCTTCGAC
GATGTGCGCA AGGCCGGCGA CGCCGTGGCC GCCGTGATTG CGGCCGGCAT CATCCCGGCC
GGGCTGGAGA TGATGGACAA GCCCATGACG GCCGCCGTCG AGGACTTCGT CAAGGCCGGC
TACGACCTCA CGGCCGAGGC CATCTTGCTG TGCGAGAGCG ACGGCACGCC CGAGGAAGTC
GAGGAAGAGA TCGCCCACAT GAGCGAGGTG CTGCGCGGCG CCGGGGCCAC GGCCATCACC
GTCAGCGAGA GCGAGGCCGA GCGCCTGCGC TTCTGGAGCG GGCGCAAGAA CGCCTTTCCC
GCCAGCGGGC GCATCAGCCC CGACTACATG TGCATGGACT CCACCATCCC GCGCAAGCGC
CTGGCCGACA TCCTGCTGGC CATCCAGGAG ATGGAAAAGA AATACGGCCT GCGCTGCGCC
AACGTCTTCC ACGCGGGCGA CGGCAACCTG CACCCGCTGA TCCTGTTCGA TGCCAACGAC
CCCGACGAGC TGCACCGCTG CGAGCTGTTC GGCGCCGACA TCCTGGAGAC CAGCGTGGCC
ATGGGCGGCA CGGTCACGGG CGAGCATGGC GTGGGCGTGG AAAAGCTCAA CTCCATGTGC
ACCCAGTTCA CCACGGCCGA GAACGACCAG ATGTTCGCGC TCAAGGCCGC CTTCGACCCG
CAGGCCCTGC TCAACCCCGG CAAGGTGATT CCCACGCTCA ACCGCTGCGC CGAGTACGGA
AAGATGCTGG TGCGCGGCGG CCAGATCTCA CACCCGGACC TGCCGAGATT CTGA
|
|---|
| Protein sequence | MTSASSPASL APGAMASAAA DAAHQQPTVS ERARRQAEVV AALARHVPAH ALLWNAEDTT
PYECDGLTAY RQRPLVVCLP ETEAQVQAVL RACHAIQVPV IARGAGTGLS GGALPHPMGV
TLSLAKFNKI LQVDAASRTA VVQCGVRNLA ISEAAAPFGL YYAPDPSSQI ACTIGGNVAE
NSGGVHCLKY GLTVHNVLKV RGFTVEGEPV EFGSTALDTP GFDLLAILVG SEGMLAVTTE
VTVRLIPKPQ LARCIMASFD DVRKAGDAVA AVIAAGIIPA GLEMMDKPMT AAVEDFVKAG
YDLTAEAILL CESDGTPEEV EEEIAHMSEV LRGAGATAIT VSESEAERLR FWSGRKNAFP
ASGRISPDYM CMDSTIPRKR LADILLAIQE MEKKYGLRCA NVFHAGDGNL HPLILFDAND
PDELHRCELF GADILETSVA MGGTVTGEHG VGVEKLNSMC TQFTTAENDQ MFALKAAFDP
QALLNPGKVI PTLNRCAEYG KMLVRGGQIS HPDLPRF
|
|---|
| |