| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1080 |
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| Symbol | |
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| ID | 5746635 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 1194358 |
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| End bp | 1196268 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641296160 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001562110 |
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| Protein GI | 160896528 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCTGT ACGTGTGCGC AGGTCTGCTG TGGCTCTGGG GCGTGGAATG GCTGCTGGCG
CACCTGCAGA TTCCGCCCGA GGCGGCGGCG CAGCGGCGCA TGCTGTCCTC GGTGACCCTG
GTGCTGGTCA CGGCCGTGGG CGGCGGCTGG CTGCTGTGGC GCATGCGCCG TGGAGAGCGC
ACTGCCCATG CCGCGATGGC CGCCGGGCGG GAGGCCGACG AACGCCAGCG CCTGGCCACC
GCCGTGGTGG ACAACACCAT GGAGGGCGTG GTCGTCACCG ACGCGCGCAG CCGCATCCTC
TCGGTCAACA GCGCCTTCAC GCGGCTGCTG GGCTATACCG AGCAGGAGAT GCTGGGCAAG
ACCCCGCGCA TGTTCAAGTC CGGCCGCCAT GACAAGGCCT TCTACGAGGC CATGTGGGAC
AGCATGCAGG CCACGGGCCA CTGGCAGGGC GAAATCTGGA ACCGCCGCAA GAACGGCGAG
GTCTTCCCCG AGCGCATGTC GCTCAGCGCC GTCAAGGACG CACAGGGCAA GGTCACGCAC
TACGTGTGCA TGTTCACCGA CATCTCGGCC GAGAAGGCGC GCGAGGCCCA GCTCGAATTC
CTGGCCCACC GCGACATGCT CACCGGCCTG CCCAACAGCG TGCGCTTCAC AGCGCTGCTG
GAAGACGCCG TGGCCGAGGC GGCCGCCGAG CAGGGCACGC TGGCCGTGAT GCTGCTGAAC
ATCGATCGCT TCAAGGACGT CAACGACAGC TACGGCCACG CCATTGGCGA CCAGGTGCTG
CGCCACATCG CCGCCCGTGT GCACGACTCC CTGGGACCCC AGGACCTCAT AGGTCGCATG
GCCGGTGACG AACTGGCCGT GCTGTGCAAG GGCATGAGCG AGCGCGGCGA CGCCATCGCC
CGTGCACGGC AACTGATCGC GGCGGCCGGC CAGCCCTGGA GCTCGCCCGA CGGCCTGTCC
GTCATGGCCG GCGTCAGCGT GGGCATCTGC ATGTATCCCT CCCACGCCGG CAATGCCCAG
GACCTGCTGC AGGGCGCGCA CGCCGCCGTC TACGGCGCCA AGTCGCGCAG CGGCCGTGCC
TGGTGCTTCT TCGAGGAAGA CATGACCTCG GCCGCGCGCG AGCGCCTGGC CATGGAGGCA
CGGCTGCGGC AGGCCATAGA CCTGGGCCAC CTGCGCCTGT ACTTCCAGCC CCAGATCGAC
CTGGCCACGG GCCGCCTGGT GGGCGCCGAG GCCCTGGTGC GCTGGCTGGA CCCGGACGAG
GGCCTCATCT CCCCGGCCCG CTTCATTCCC GTGGCCGAAA GCTCGGGTGT CATCGGCGCG
CTGGGCCTGT GGGTGCTGCG CGAGGCCTGC GCCCAGGGCC GGCGCTGGCG CGATCAGGGC
CTGCCCGAGA TGACCATCGC GGTCAATGTC TCGCTGCACC AGTTCCTGCT GACCGACATC
GCCGGCGCCA CCGCCGACGC GCTGGCCGCC ACGGGCTTCG CCCCGCACTG CCTGGAGCTG
GAAATCACCG AAAGCGCCCT GGCCGAGCGC CCCGAGGAGG CCCTGGCCGT CATGCGCCGC
CTGCGCGCCC AGGGCCTGCG GCTGGCCATC GACGACTTCG GCACCGGCTA TTCCTCGCTG
GCCCACCTCA AGCGCTTTCC GCTGGACCTG CTCAAGATCG ACCAGGGCTT CATCCGCGAT
ATTCCGCACA GCGCGGACGA CATGGCCATC AGCGGGTCGG TGATCGCGCT GGGGCATGCC
ATGGGGCTCA AGGTTCTGGC CGAGGGCGTG GAGACGGCCG AGCAACTGGC ATTCCTGCGC
GGCAAGGGGT GCGACTTCTT CCAGGGCTAT CTGTGCAGCA AGCCCTTGCC CGCACAGGCG
TTTGGGGAGT GGGTGTCGGA CAACCAGGGC ATGTGGGCCG TGCAGGGCTG A
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| Protein sequence | MTLYVCAGLL WLWGVEWLLA HLQIPPEAAA QRRMLSSVTL VLVTAVGGGW LLWRMRRGER
TAHAAMAAGR EADERQRLAT AVVDNTMEGV VVTDARSRIL SVNSAFTRLL GYTEQEMLGK
TPRMFKSGRH DKAFYEAMWD SMQATGHWQG EIWNRRKNGE VFPERMSLSA VKDAQGKVTH
YVCMFTDISA EKAREAQLEF LAHRDMLTGL PNSVRFTALL EDAVAEAAAE QGTLAVMLLN
IDRFKDVNDS YGHAIGDQVL RHIAARVHDS LGPQDLIGRM AGDELAVLCK GMSERGDAIA
RARQLIAAAG QPWSSPDGLS VMAGVSVGIC MYPSHAGNAQ DLLQGAHAAV YGAKSRSGRA
WCFFEEDMTS AARERLAMEA RLRQAIDLGH LRLYFQPQID LATGRLVGAE ALVRWLDPDE
GLISPARFIP VAESSGVIGA LGLWVLREAC AQGRRWRDQG LPEMTIAVNV SLHQFLLTDI
AGATADALAA TGFAPHCLEL EITESALAER PEEALAVMRR LRAQGLRLAI DDFGTGYSSL
AHLKRFPLDL LKIDQGFIRD IPHSADDMAI SGSVIALGHA MGLKVLAEGV ETAEQLAFLR
GKGCDFFQGY LCSKPLPAQA FGEWVSDNQG MWAVQG
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