| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1020 |
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| Symbol | |
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| ID | 5746574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 1135161 |
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| End bp | 1136858 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641296100 |
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| Product | thiamine pyrophosphate binding domain-containing protein |
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| Protein accession | YP_001562051 |
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| Protein GI | 160896469 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACCG CTTTCAATGG CGCCGACGCC ATGGTCCGCA TGCTGCAGCT CAATGGCGTC
AAGCACATCT TCGGCCTGTG CGGCGACACC AGCCTGCCCT TCTACGACGC CATGGCGCGG
CTGGACCACG GCATGGACCA CATCCTCACG CGGGACGAGC GCAGCGCCGG CTACATGGCC
GACGCCTATG CGCGCGTCAC AGGCAAGGTG GGCGTGTGCG AAGGCCCCAG CGGAGGCGGC
GCCACCTACC TGCTGCCCGG CCTGGCCGAG GCCAACGAGT CCTCGGTGCC CGTGCTGGGT
ATCACCTCGG ACGTTTCCGT GGGCGCACGC GGCAAGTTCC CGCTGACCGA ACTCGACCAG
CAGGCGCTGT ACAAGCCGCT GACCAAGTGG AATACCACCA TCGACCGCGT GGACCAGATT
CCGCACGCCG TGCGCAGCGC CTTTCGCGCC ATGACCACGG GCCGGCCCGG CGCCACCCAT
ATCTGCCTGC CCTATGACGT GCAAAAGCAC ACGCTGGATC CGGCCGATGT CTGGGCCCAG
CCAGGGCATG ACCACTATCC GGCCTATCGG TCCGCCCCCG ATCCGGCGGC CGTGGCCGAG
GCGGCCGACC GCCTGGTGGC GGCGCGCTGC CCCGTGCTGA TCTGCGGCGG CGGCGTGCTC
ATCGCAGGCG CCAGCGCCGC ACTGGATGCG CTGGCCACCG TGCTCAACGC GCCCGTGTGC
TCCAGCGTCA GCGGCCAGGG CAGCCTGGCG GGCAGCCATC CGCTCAATGC CGGCGTGGTG
GGCACCAATG GCGGCGTCGA GGCCACGCGC GCCGTGGTGG CGCAGGCGGA CCTGGTGATG
TTCATCGGCG CCCGGGCCGG CTCCACCACC ACCGAGCACT GGCAGATGCC CTCGCGCAAG
GTCACCATCG TCCACCTGGA CGTGGACGCC ATGACCATAG GCACCAACTA CCGCACCGAC
GTGGCCCTGG TGGGCGACGC CCTGCTGGGC CTGCAGGCGC TGCACGCGGC CGTGCAGCAG
CGCATCGCCC GCCGCCCCGC CGATGCCGCG GACGGCGCCT CGCTGGCGGC CACCGCGCGC
GCCGCCAAGC AGGCCTTCTT CGCACCGCTG GCCGCCTCGC TGGAGCGCCC CATCAAGCCC
GAGCGCGTGG TGGACACGCT CAACCGCCTG CTGCCCGCGC GCGCAATCGT GGTGGCCGAC
CCCGGCACGC CCTGCCCCTA CTTCACGGCC TATTTCGACG CGCCCCAGGC CGGCCGGCAC
TTCATCACCA ACCGCGCGCA CGGGGCGCTG GGCTTTGCCA TGTCCGCCGG CTTTGGCGCC
GCCATCGGCC AGCCCGATTC CGTGGTGGTC GCGGTCATGG GCGACGGCAG CTTCGGCTTC
ACCTGCGGCG AGCTGGAAAC CATCGTGCGC CGCAACGTGC CGCTGAAGAT GATCGTGTTC
TCCAACAGCG TGTTCGGCTG GATCAAGGCC AGCCAGAAGT CCGGCTACGA TGAACGCTAC
TTCTCCGTCG ACTTCAACCG CACCCACCAT GCCCGCGTGG CCGAGGCCTT CGGCGTCAAG
GCCTGGCAGG TGCATGACCC GGCAGATCTC GAAGCCGCGC TCAAGGCCGC GCTGATGCAC
GACGGCCCGG CGCTGGTGGA TGTGATCTCG CAAGAGCTCC AGGACACGGC CGTTCCGGTG
AGCCAGTGGA TGGGTTGA
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| Protein sequence | MTTAFNGADA MVRMLQLNGV KHIFGLCGDT SLPFYDAMAR LDHGMDHILT RDERSAGYMA
DAYARVTGKV GVCEGPSGGG ATYLLPGLAE ANESSVPVLG ITSDVSVGAR GKFPLTELDQ
QALYKPLTKW NTTIDRVDQI PHAVRSAFRA MTTGRPGATH ICLPYDVQKH TLDPADVWAQ
PGHDHYPAYR SAPDPAAVAE AADRLVAARC PVLICGGGVL IAGASAALDA LATVLNAPVC
SSVSGQGSLA GSHPLNAGVV GTNGGVEATR AVVAQADLVM FIGARAGSTT TEHWQMPSRK
VTIVHLDVDA MTIGTNYRTD VALVGDALLG LQALHAAVQQ RIARRPADAA DGASLAATAR
AAKQAFFAPL AASLERPIKP ERVVDTLNRL LPARAIVVAD PGTPCPYFTA YFDAPQAGRH
FITNRAHGAL GFAMSAGFGA AIGQPDSVVV AVMGDGSFGF TCGELETIVR RNVPLKMIVF
SNSVFGWIKA SQKSGYDERY FSVDFNRTHH ARVAEAFGVK AWQVHDPADL EAALKAALMH
DGPALVDVIS QELQDTAVPV SQWMG
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