| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_1001 |
|---|
| Symbol | |
|---|
| ID | 5746555 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 1112829 |
|---|
| End bp | 1113362 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641296081 |
|---|
| Product | putative PTS IIA-like nitrogen-regulatory protein PtsN |
|---|
| Protein accession | YP_001562032 |
|---|
| Protein GI | 160896450 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) |
|---|
| TIGRFAM ID | [TIGR01419] PTS IIA-like nitrogen-regulatory protein PtsN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGGTCA GGGTTTCCCC ACGGTTTCCG GCACTGCGGT GCATAATTGT TTCCCGAACC
ATGAACCGTC TTGCCTCCAT CCTGCCCGCC GCTCAAGTGC TCGTGAGCGT CGACGTCACC
AGCAAAAAGC GCGCTTTCGA AGAAGCAGGT CTGCTCTTCG AGAGCCTGCA TGGCCTGTCC
CGCGCACTCA TCACCGACAG CCTGTTTGCA CGCGAACGCC TGGGCTCGAC GGGGCTTGGC
CACGGCGTGG CCATTCCCCA TGGGCGCATC AAGGGCCTGA CCGCTCCCAT GGCGGCTGTG
TTCCAACTGG ACAATCCCAT TGGTTTCGAT GCCCCCGATG AGCAGCCCGT GGGCCTGCTG
ATCTTTCTGC TGGTGCCCGA AGCGGCCACC CAGAAGCATC TGGAAATCCT GTCCGAAATC
GCCGAGCTTC TCAGCGACAG CCAGCTGCGC GAGCGCCTGA AGTCCTGCGC AGATGCGGCC
CGGCTGCATG GAATGATTGC CGGCTGGCAG TCCTCCGCTG CGCCCCTGGT CTAG
|
|---|
| Protein sequence | MGVRVSPRFP ALRCIIVSRT MNRLASILPA AQVLVSVDVT SKKRAFEEAG LLFESLHGLS
RALITDSLFA RERLGSTGLG HGVAIPHGRI KGLTAPMAAV FQLDNPIGFD APDEQPVGLL
IFLLVPEAAT QKHLEILSEI AELLSDSQLR ERLKSCADAA RLHGMIAGWQ SSAAPLV
|
|---|
| |