| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0884 |
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| Symbol | |
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| ID | 5746438 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 990694 |
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| End bp | 993621 |
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| Gene Length | 2928 bp |
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| Protein Length | 975 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641295964 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_001561915 |
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| Protein GI | 160896333 |
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| COG category | [B] Chromatin structure and dynamics
[L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG5531] SWIB-domain-containing proteins implicated in chromatin remodeling |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.979089 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAAGA CCCTGGTGAT TGCTGAGAAG CCTTCGGTCG CGCAGGACAT CGTCCGCGCG
TTGACTCCGG TGGCGGGCAA ATTCGACAAG CACGATGAAT ACTTCGAGAG CGAGCACTAC
GTCGTGACCA GCGCCGTGGG CCACCTGGTG GAAATCCAGG CGCCCGAGGA ATTCGACGTC
AAGCGCGGCA AATGGAGTTT TGCCAATCTG CCGGTGATTC CGCCGTATTT CGACCTCAAG
CCCGTGGACA AGACCAAGAG CCGGCTCAAT GCCGTGGTCA AGCTGGCCAA GCGCAAGGAT
GTCACCGAAC TCATCAACGC CTGCGACGCG GGCCGCGAGG GTGAGCTGAT CTTCCGCCTG
ATCGAGCAGT ACGCCGCAGG CGCCAAGCCC GATGGCAAGG GCCTGGGCAA GCCGGTCAAA
CGCCTGTGGC TGCAGTCCAT GACGCCGCAG GCCATCCGCG ACGGCTTCCA GAACCTGCGC
AGCGACGCGC AGATGCTGGG CCTGGCCAGC GCCGCGCGCA GCCGCTCCGA GGCCGACTGG
CTGGTGGGCA TCAACGGCAC GCGCGCCATG ACGGCCTTCA ATTCGCGCGA TGGCGGCTTC
TTCCTGACCA CCGTGGGCCG CGTGCAGACG CCCACGCTGT CCCTGGTGGT GGAGCGCGAG
GAAAAGATCC GCAAGTTCGT GAGCCGCGAC TACTGGGAAG TGCATGCCGC CTTCGATGCG
CAGGCCGGCC AGTACCTGGG CAAGTGGTTC GACACGCAAT GGAAGAAGAG CGAGGATGCG
GAAGCCCGCG CCGACCGCAT CTGGAACCAG CGCGACGCCC AGGCCATTGC CGACGCCGTG
CGCGGCAAGC CAGCCCAGGT CACCGAGGAG TCCAAGCCTA CGTCCCAGGC CAGCCCGCTG
CTGTTCGACC TGACCAGCCT GCAGCGCGAG GCCAACGGCA AGTTCGGCTT CTCGGCCAAG
ACCACGCTGT CGCTGGCGCA AAGCCTGTAC GAGCGCCACA AGGCCCTGAC CTACCCGCGT
ACCGACTCGC GTGCCCTGCC CGAGGACTAC GTGCCCGTGG CGCACCAGAC CTTCGCCATG
CTGGCCGGCA GCGGCATGCG CCACCTGGCG CCCTTTGCCC AGCAGGCGCT GGACGAGAAC
TACGTGCGCC CGACTAAGCG TATCTTCGAC AACAGCAAGG TGTCGGATCA CTTTGCCATC
ATCCCGACCA CGCAGGCGCC CAGCGGCCTG TCCGAGGCCG AGCAAAAGCT CTATGACCTC
GTCGTGCGCC GCTTCATGGC CGTGTTCTTC CCCAGCGCCG AGCACCAGGT GACCACGCGC
ATCAGCAAGG TCGAGCAGCA CAGCTTCAAG ACCGAGGGCA AGATCCTGGT CAAGCCCGGT
TGGCTGGCCA TCTACGGCAA GGAGGCCGCC AACGAGGTGG AAGGCGGCAA GGACGGCGAC
AAGGGCCAGC CCCTGGTCGC GGTGCAGCCC GGCGAGCAGC CGCGCGCCGG CCAGGTCGAT
CCCAAGGGCC TCAAGACCAA GCCGCCCGCG CGCTACTCCG AAGCCACGCT GCTGGGCGCC
ATGGAAAGCG CCGGCAAGCA GGTCGAGGAC GACGAGCTGC GCGAGGCCAT GCAGGAAAAG
GGCCTGGGCA CGCCTGCCAC GCGCGCGGCC ATCATCGAAG GCCTGCTGAC CGAAAAGTAC
ATGCTGCGCG AAGGCCGCGA GCTGATTCCC ACGGCCAAGG CCTTCCAGCT CATGACCTTG
CTGCGCGGCC TGGGCGTGGA AGAACTCTCG CGCGCCGACC TCACCGGCGA ATGGGAGTAC
AAGCTGGCGC AGATGGAAAA GGGCCAGCTC TCGCGCGATG CCTTCATGCA GCAGATCCAG
GCCATGACGG AAAAGCTGGT CAAGAAGGCC AAGGAATACG ACCGCGACAC CGTGCCCGGC
GACTACGCCA CCCTGTCCAC GCCTTGCCCC AACTGCGGCG GCGTGGTCAA GGAGAACTAC
CGCCGCTACG GCTGCACGGG CAGCGACGGA CAGGGCGCGG GCTGCGGCTT CTCGTTCACC
AAGTCGCCTG CAGGCCGCAC CTTCGAGACG GCCGAGGCCG AGCAACTGCT GCGCGACCGC
CGCCTGGGTC CGCTGGACGG CTTTCGCTCC AAGGCAGGCT GGCCCTTCGT GGCCGAGGTC
ACCATCGTGC ACGATGAGGA AGGCGGCAAC TACAAGCTCG AGTTCGACTT TGGCGACGAT
GCCGCCTCCG AAGACACGGG CGAGCTGGTG GACTTTGCCA GCCAGCAATC GCTGGGGCCC
TGCCCCAAGT GCGGCGCGCC GGTCTTCGAA CACGGCAGCA ACTACGTCTG CGCCAAGGCC
GTGCCCACGC TGGCCCAGGC CACGCCCAGC TGCGACTTCA AGAGCGGCCA GATCATCCTG
CAGCAGCCCA TAGAGCGCGA GCAGATGCAA AAGCTGCTGC AGACCGGCAA GACCGACCTG
CTGGACAAGT TCGTCTCCAA CCGCACGCGC CGCAGCTTCA AGGCCTTCCT GGTCTGGGAT
GGCGCGGCCG GCAAGGTCAA CTTCGAGTTC GAGCAGCGCG ACAGCAAGTA CCCGCCGCGC
AAGACGGCGG CCGCCAAGAG CGCGCCGGCC AAGAAGGCGC CTGCCAAGAA AGCCGCGGCC
AAGACCACGG CAAAGACGGC CACCAAGACC GCCACCAAGA CCGCGCGCAA GCCGGCTGCC
GGCACGCTGC AGCCCAGCGC GGCCCTGGCC GCCGTCATCG GCGAAGGCAC GGTGGCGCGT
ACCGAAGTGG TCAAGAAGCT GTGGGAATAC GTCAAGGCCC AGAACCTGCA GGACCCCAAG
GACAAGCGCG TCATCCGCGC CGATGACAAG CTGCGGCCCG TCTTCGGCAA GGACAGCGTG
AACATGTTCG AGCTGGCCGG CATCGTGGGG AAACATCTCA CCCCCTGA
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| Protein sequence | MTKTLVIAEK PSVAQDIVRA LTPVAGKFDK HDEYFESEHY VVTSAVGHLV EIQAPEEFDV
KRGKWSFANL PVIPPYFDLK PVDKTKSRLN AVVKLAKRKD VTELINACDA GREGELIFRL
IEQYAAGAKP DGKGLGKPVK RLWLQSMTPQ AIRDGFQNLR SDAQMLGLAS AARSRSEADW
LVGINGTRAM TAFNSRDGGF FLTTVGRVQT PTLSLVVERE EKIRKFVSRD YWEVHAAFDA
QAGQYLGKWF DTQWKKSEDA EARADRIWNQ RDAQAIADAV RGKPAQVTEE SKPTSQASPL
LFDLTSLQRE ANGKFGFSAK TTLSLAQSLY ERHKALTYPR TDSRALPEDY VPVAHQTFAM
LAGSGMRHLA PFAQQALDEN YVRPTKRIFD NSKVSDHFAI IPTTQAPSGL SEAEQKLYDL
VVRRFMAVFF PSAEHQVTTR ISKVEQHSFK TEGKILVKPG WLAIYGKEAA NEVEGGKDGD
KGQPLVAVQP GEQPRAGQVD PKGLKTKPPA RYSEATLLGA MESAGKQVED DELREAMQEK
GLGTPATRAA IIEGLLTEKY MLREGRELIP TAKAFQLMTL LRGLGVEELS RADLTGEWEY
KLAQMEKGQL SRDAFMQQIQ AMTEKLVKKA KEYDRDTVPG DYATLSTPCP NCGGVVKENY
RRYGCTGSDG QGAGCGFSFT KSPAGRTFET AEAEQLLRDR RLGPLDGFRS KAGWPFVAEV
TIVHDEEGGN YKLEFDFGDD AASEDTGELV DFASQQSLGP CPKCGAPVFE HGSNYVCAKA
VPTLAQATPS CDFKSGQIIL QQPIEREQMQ KLLQTGKTDL LDKFVSNRTR RSFKAFLVWD
GAAGKVNFEF EQRDSKYPPR KTAAAKSAPA KKAPAKKAAA KTTAKTATKT ATKTARKPAA
GTLQPSAALA AVIGEGTVAR TEVVKKLWEY VKAQNLQDPK DKRVIRADDK LRPVFGKDSV
NMFELAGIVG KHLTP
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