| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0847 |
|---|
| Symbol | |
|---|
| ID | 5746401 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 947610 |
|---|
| End bp | 949679 |
|---|
| Gene Length | 2070 bp |
|---|
| Protein Length | 689 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641295927 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001561878 |
|---|
| Protein GI | 160896296 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCCCA TGCCCGAAGG CCGCTGGCCC TGGCGCCGCT GGCGCACGGC CTGGCGCCGC
TGGTCGCTAT GGAGCCTGCT GGTCGCCCTG GTCCTGAGCA TGCTCGTCAC CATGGTCTGG
CTGGCCGGGC GCTACGAGGC CTCCCAGGTC CAGGACAAGC TGGAGCGCGA CACGGCCAAT
GCCGTGGCCG ACATACGCGC AGCGCTCAAC CGCAACCTGC AGGACCTGCA GGCGCTGAAC
GCGCCCGACA ACGAGCCCGC CGAATGGAAG ACCCGCGCCG CCGAACTGCT GCAGGTGCGC
CGCGAGCTGA TGCGCATCGA GTGGCGCGAC GCGGGCCTGC AGATCCGCTC CCATGCCGAG
ACCCCCTATC GCAATGTGCA GTGGGAAGAC CAGCTGCGCA CGAACAACAC CCACCCCGAG
GCCGTGCTGA CCTGCACCCA CGCGCGCCGC CTGAACGGCC CCGCCTACTC GCCCAGCTAC
TTCCAGCTGC TGGCCGAGGG CCTGGGCACG GAGATGATGG AGGTCTGCCT GCCGCTGACG
CAAAGCGGCC ACATCATCGG CTTCGTCATC GGCACCTACA GCCTGCAAAG CCTGCTGATC
ACCCAGGTCA GCAAGAACCT GCCGCGCACC CAGGAAGTGT CCTTCACCGA GCCCGACGGC
ACGCGCCTGG CCCTGCTGGG CGCCTCCTGG CGCGGCACGC GCATGTTCAC GGCGCAGCAG
CTGCTGGATC TGCCCGGCAG CACCCTGGTG CTGCGCATGG ACAGCTGGCA CCGCGCGCCC
AGCGTGTTCC CCAACGTGCT CACGGCCCTG GTGACGCTGA TGTCCATCGC CCTGGTCTCC
GTGGTCGCCG TGCTGGTGCG CGACAACCGC CGCCGCCTGC GTGCCGAGCG TGACCTGGGC
GATGCGCTGG CCTTTCGCAA GGCCATGGAG GACTCGCTGG TCACGGGCCT GCGCGCGCGC
GACCTGCAGG GCCGCATCAG CTATGTGAAT CCGGCCTTCT GCAACATGGT GGGCTTCACG
GCCGAGGAGC TGCTGGGCCT GAGCATCGCG CCCTACTGGC CGCCCGAGCG CGCCGAAATC
TACGCGCGCC GGCGCGACAA CCGCCTGTCC GGCAACGCAC CGCCGCCGCG CGAGGGCCAC
GAAAGCATCT TCATGCGCAA GGACGGCACA CGCATTCCGG TGCTGATCTT CGAGGCGCCG
CTGATCAACG CCCAGGGCCA GCACACGGGC TGGATGAGCG CCTTCATCGA CATCAGCGAG
CAAAAGCGCA TGGAAGAGAT CTCGCGCGCC TCGCAGGAGC GCCTGCAGGC CACGGCACGC
CTGGCCACCG TGGGCGAAAT GGCATCGCTG CTCAGCCATG AACTCACCCA GCCGCTGGTG
GCCATCTCCA GCTACGCCAC GGGATCGCTG AACATGCTGG GCAGCGACGA CGGTGCGGCA
GGCAGCGCCG GCAACGAAGC CCATCTGCGC CAGCAGTTGC AGGACTTGCG CATGGCCATG
GAGCGCATCA GCTTCCAGGC CGACCGTGCA GGCCGCGTGA TCAAGAGCGT GCGCGACTTC
GTGCGGCGAC GCGACCAGTC ACGCGAAGTC ATAGGTGCCG CCGAACTCAT AGACGCCGTG
CTGCCGCTGG TCAGCCTGCA GGCGCGCAAC CTGGGCGTGC GCGTGACCAC CGATATCGAG
CCCGGCCTGT CGCCCGTGCT CTGCGATCCG ACCATGATCG AGCAGGTGCT GCTCAACCTG
GCGCGCAACG ACATGCAGGC CATGGACTCG CCCGAGACCG TGGACCGCGA ACTGCAGTTG
CGCGTGCGGC GTGCGGCCGC CAGCACGCGC CGCAGCTGGG TGGAATTCGC CGTCATCGAC
TGCGGCAGCG GCATCCCCAA GCATGTGGCG GAGCAGTTGT TCACGCCCTT CTTCACCACG
CGCAACGAGG GCATGGGCCT GGGCCTGAGC CTGTGCCGCA CCGTGGTCGA ACAGCATGGC
GGCCACCTGC AGCACAGCCC GCACAGCCCG CGCGGAACCG TCTTCGCCTT CACGCTGCCG
ACCCACAACC CGGCACAGGT GGAACCATAG
|
|---|
| Protein sequence | MSPMPEGRWP WRRWRTAWRR WSLWSLLVAL VLSMLVTMVW LAGRYEASQV QDKLERDTAN
AVADIRAALN RNLQDLQALN APDNEPAEWK TRAAELLQVR RELMRIEWRD AGLQIRSHAE
TPYRNVQWED QLRTNNTHPE AVLTCTHARR LNGPAYSPSY FQLLAEGLGT EMMEVCLPLT
QSGHIIGFVI GTYSLQSLLI TQVSKNLPRT QEVSFTEPDG TRLALLGASW RGTRMFTAQQ
LLDLPGSTLV LRMDSWHRAP SVFPNVLTAL VTLMSIALVS VVAVLVRDNR RRLRAERDLG
DALAFRKAME DSLVTGLRAR DLQGRISYVN PAFCNMVGFT AEELLGLSIA PYWPPERAEI
YARRRDNRLS GNAPPPREGH ESIFMRKDGT RIPVLIFEAP LINAQGQHTG WMSAFIDISE
QKRMEEISRA SQERLQATAR LATVGEMASL LSHELTQPLV AISSYATGSL NMLGSDDGAA
GSAGNEAHLR QQLQDLRMAM ERISFQADRA GRVIKSVRDF VRRRDQSREV IGAAELIDAV
LPLVSLQARN LGVRVTTDIE PGLSPVLCDP TMIEQVLLNL ARNDMQAMDS PETVDRELQL
RVRRAAASTR RSWVEFAVID CGSGIPKHVA EQLFTPFFTT RNEGMGLGLS LCRTVVEQHG
GHLQHSPHSP RGTVFAFTLP THNPAQVEP
|
|---|
| |