| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0734 |
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| Symbol | |
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| ID | 5746288 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 811382 |
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| End bp | 814027 |
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| Gene Length | 2646 bp |
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| Protein Length | 881 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641295814 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001561765 |
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| Protein GI | 160896183 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.702942 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAAT CAGCAAGACG CCGATTTATC GGACTGATCA CGGTGAGCTA CGGGTTGCTG
GCGTTCGCCT GGATCATCCT GTCCGACAAG CTGTTGTTCG CACTGGCGGG CAGCGCGGAC
ATCGGCTGGC TCTCGGTGGG CAAGGGACTG TTCTTTGTCC TGGCGACCGA CTTCCTGCTG
TTCTTCGCGC TGTGCTCGGT GCCGGCTGCG CAGGACAGCG GCGCCTCGGC CATTGCGCAG
GAAATGGGGC CGCGCCGTTT TCCGGTATGG GCCTCGTATC TGTTTTCCCT GGCCATGAGC
CTGGCCGTGC TGGCTGCCAG CAGCACGCTG GCCAGCCATT TCGGCGAACG GTCGCTGCTG
CTGCTGTTCA TGCTGCCCGT GCTGGTCAGT GCGCTGATCG GCGGCCTGGG GCCGGGCCTG
CTGGCCACGG CCTTTGCGGC CTACAGCCTG GACCAGACCG ACGGCGTGGA CGTGCGCGAC
TGGGCGCAGT GGGGCGTGGT GGCCGTCAAC GGCCTGGCCG TGAGCGTGCT GGCCGAGACG
CTGCAGCGCT CGCTGCGCAA GGCCAACATG CAGCGGCAGC TGCTGGACTC GGTGATCTCC
GGCACCTCGG ACGCCGTCTT CGTGAAGGAC CTGCGCGGGC GCTACCTGCT GGTCAACCGG
GCCGCCGCCA GCCTGGTGGG CCGGCAGGCC GAAGACATCG TGGGCAAGGA CGACTTCGCG
CTCTTTCCCT TCGGCATCGC CAGCGCCATC CGCAGGAAGG ACCAGGCTGT GCTGCGCCAG
GAGGTGGCCA CGCATGAGGA GCAGCTGACG GTGGAGCCGG GCAGGACGCT GGACCTCCTG
GTCACCAAGG GCCCGGTGCG CAACACCGCA GGCCACATCG CGGGCCTGTT CGGCATCTCC
CGGGACATCA CCGAGCGCAA GCGCTTCGAG CGCGAGCTGG CCCAGGCCGC CGTGGTGTTC
GACAGCAGCC ACCAGGGCAT CATGGTGGTC GATCCGGGGC GGCGCATCAC GCGTGTCAAC
CCGGCCTTCA CCCGCATCAC CGGTTATGCG TCCGAGGACG TGATCGGCAA GACACCGCGC
GTGCTGTCCT CGGGCCTGCA CGGCCCGGAG TTCTACCGGC AGATCTGGGC CTGCATCGAG
CGCGACGGCT TCTGGCACGG CGAGATCTGG AACCGCCGCA AGACGGGCGA GATCTTCGCC
GAGATGCTGT CCATCTCCGC CGCGCAGGGC GCCGGTGGCG AGATCGAGCA CTACATCGGC
GTCTTCACCG ATATCAGCCA CATCAAGGCC CACGAGGCCG AGCTCGAGCG CGTCACCCAC
TACGACCTGC TCACCGGCCT GCCCAACCGC CGCCTGCTGA TCGACCGGCT CAACCAGGCC
ATGCTGCGCA CGGCGCGCGA GGGCCGCTCC CTGGCCGTGT GCTTCCTGGA CCTGGACGGC
TTCAAGGAAA TCAACGACCT GCACGGCGCG GCCGCGGGCG ATGCGCTGCT GGTGGGCGTG
GCCGCCCACC TCAAGAGCGT GCTGCGCTCC GAGGACACGC TGGCCCGGCT CGGCGGCGAC
GAATTCGTGC TGCTACTGTC GCACATCGGC TCGGCCGAGC ACTGCGCCAC CATCCTCGAC
CGGGTGCTGG AGGCGGCCAG CCGTCCCGTG CCCGTGCAGG ACAGGGTGCT GTCCGTGACC
GCCAGCCTGG GCGTCAGCCT CTACCCCGAC GACCAGGCCG ACCCCGACCT GCTGCTGCGC
CATGCCGACC AGGCCATGTG CGTGGCCAAG CAGGCCGGGC GCAACCGCTA CCAGCTGTTC
GATCCGGAAA ACGACCGCAA GGCCCATGCG CGCCGCCTGC AGCTGGGCTG GCTGCGCCAG
GCGCTGGAGA AGGGTGAATT CCTGCTGCAC TACCAGCCCA AGGTGGAGCT GGGCGGCGGC
AGGCTGGTGG GTGCCGAGGC CCTGCTGCGC TGGCACGACC CGCGCCAGGG CCTGCGCGCG
CCGGGCGAGT TCCTGCCCTT CGTGGCGGGC AGCGACCTGG AGCGGCCGCT GGGCGACTGG
GTCATTGGCG AGGCCGTGGC CCAGGCGGCG CGCTGGTTCG GCCAGGGACT GGACCTGTGC
GTGAGCATCA ACGTCAGCGC CAACCAGCTG CTGGACGGCG GCTTCCACGC CAAGATGGCC
CAGGTGCTGG CCCGCCACCC GGACCTGCCG CCGCACCTGA TCGAGCTGGA AATCCTGGAA
AGCGCCGCCA TTGCCGACAT GGAGCAGGCC ATCCAGGTGA TGGGCCAGTG CCGGCAGCTG
GGCATCCGCT TTGCGCTGGA CGACTTCGGC ACCGGCTATT CCTCGCTCAC CTACCTGCGC
AAGCTGCCCG TGCAGTCGCT CAAGATCGAC CAGAGCTTTG TGCGCGACAT GCTGGCCGAC
CCGGACGACC TGGGCATCGT CGAAGGCGTC ATCCAGCTGG CCAGCACCTT CCAGCTCGAA
TCGGTGGCCG AAGGCGTGGA AACGCCCAAG CATGCGCGCC GCCTGCGCGA CATGGGCTGC
CACGTGGCCC AGGGCTACGG CATCGCCCGG CCCATGCCCG CCGACCAGCT GCCCGCCTGG
GCCGCGCGCT GGCAGGCGGG GGACAACTGG CTGGCGCATG GGCGGCATAT GCCGTCCGAG
GTCTGA
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| Protein sequence | MAKSARRRFI GLITVSYGLL AFAWIILSDK LLFALAGSAD IGWLSVGKGL FFVLATDFLL
FFALCSVPAA QDSGASAIAQ EMGPRRFPVW ASYLFSLAMS LAVLAASSTL ASHFGERSLL
LLFMLPVLVS ALIGGLGPGL LATAFAAYSL DQTDGVDVRD WAQWGVVAVN GLAVSVLAET
LQRSLRKANM QRQLLDSVIS GTSDAVFVKD LRGRYLLVNR AAASLVGRQA EDIVGKDDFA
LFPFGIASAI RRKDQAVLRQ EVATHEEQLT VEPGRTLDLL VTKGPVRNTA GHIAGLFGIS
RDITERKRFE RELAQAAVVF DSSHQGIMVV DPGRRITRVN PAFTRITGYA SEDVIGKTPR
VLSSGLHGPE FYRQIWACIE RDGFWHGEIW NRRKTGEIFA EMLSISAAQG AGGEIEHYIG
VFTDISHIKA HEAELERVTH YDLLTGLPNR RLLIDRLNQA MLRTAREGRS LAVCFLDLDG
FKEINDLHGA AAGDALLVGV AAHLKSVLRS EDTLARLGGD EFVLLLSHIG SAEHCATILD
RVLEAASRPV PVQDRVLSVT ASLGVSLYPD DQADPDLLLR HADQAMCVAK QAGRNRYQLF
DPENDRKAHA RRLQLGWLRQ ALEKGEFLLH YQPKVELGGG RLVGAEALLR WHDPRQGLRA
PGEFLPFVAG SDLERPLGDW VIGEAVAQAA RWFGQGLDLC VSINVSANQL LDGGFHAKMA
QVLARHPDLP PHLIELEILE SAAIADMEQA IQVMGQCRQL GIRFALDDFG TGYSSLTYLR
KLPVQSLKID QSFVRDMLAD PDDLGIVEGV IQLASTFQLE SVAEGVETPK HARRLRDMGC
HVAQGYGIAR PMPADQLPAW AARWQAGDNW LAHGRHMPSE V
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