| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0720 |
|---|
| Symbol | |
|---|
| ID | 5746274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 797060 |
|---|
| End bp | 799027 |
|---|
| Gene Length | 1968 bp |
|---|
| Protein Length | 655 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641295800 |
|---|
| Product | putative site-specific recombinase transmembrane protein |
|---|
| Protein accession | YP_001561751 |
|---|
| Protein GI | 160896169 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4389] Site-specific recombinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGAA TCACCCAAGA CCTGCCCGGC CTTCTGGCCG CACTCGACCC CGAGGCCGAC
CTCGCGCACC GCCATATCTG GCTGATCCAC CTGCTGGAGT GGGTGCGCGC GCCCAAGCCG
TCGGTGGACG GCGCCGTGCA GCGTGTGCAG TTGCTGGTGG AGGCCGTGGA GGCCGACCCG
GCCGTGCGCC AGCGCCTGCA TGCCTGGTGG CTGCGCTTCA TCGACACCGT GGACATCACG
GCGCTGCTGG CCGATTTCGG CTTTGCACCG CGCACCAACA TGTTCAGCGA GCTGTCCGAG
CGCGCACGCT ACAAGCTGCT GCCCAGCACG CCGGAGACGG TGGATGCTTC CGAGCTGTTC
ATGCTGGCCA TGCCCGACGA ATTCGACGCG CGCTGGCTGC ACGCGCTGGA GGCGCCGCTG
CTCGAACGCA TCGCACTGCT GCTGACCGAC GGCAGCGAGG GCCAGGGCAG CAGCTTCTGG
CAGAACAGCC TGCTGGGCTC CATCACCTAT TGCACGGGGC AGATCCTGTC CACAGGCTTT
TCGCCCGAAC TGCGCCTGCG CATGGACGAG CAGGCGCGCG ACGACCAGCC CTTCCACGCC
CTGATCCACG ACGCAGAGAG CCTGCGCGTG GAGGTGATGC ACGCGCTGCG CACCAATGAC
CGGCGCGATG CGGCCGAGGC CCGGCTGCGC GAGCGCCTGG ATGCCTGTCG CGCGGCCGTG
ACATCGGTCT ACACACATTT CGAGTCCGAA GGGATTTCGG TGGGCCTGGT GTTCCGCCTG
CGCCAGCTGC GCGCGCGCAT CCTGCGCGTC AGGCGGCTGC TGGACTGCCT TGTGGCCGAC
AACCGCGCCA CCGAGACGGC CGACCTGCTG GCCAACCTGG TGTCCGTGGG CATCGAGCGG
CGCAGCCTGC GCGCGCTGCT GTCCACCAAC ACCTCTCTGC TGGCGGCCAA GGTGGCCGAG
CGCAGCGCCG AGACCGGCGA GCACTACATC ACCCGCACCG GCCGCGAATA CCTGTCCATG
GCAACCAAGG CCGCCGGCGG CGGCTTCGTG ATGGCCTTCA CCACGCTGCT GAAGTTCGCG
CTCTACGCGC TGGGGCTGTC AGCGTTCTGG GGCGGGCTGG CGGCGGGCAT CAACTACTCC
ATCAGCTTTG TGCTGATCCA GCTGCTGCAC TTCACGGTGG CGACCAAGCA GCCGGCCATG
ACGGCACCGG CCATGGCCGC CAAGCTCAAG GACCTGCGCG CCAGCGAGGC CATCGAGGAG
TTCGTGGACG AGGTCGCCCA CCTGGTGCGC TCGCAGGTGG CGGCCGTGCT GGGCAACGTG
TTGGTGGTGC TGCCCATGGT GCTGCTGCTG TCGCTGGGCT ATGCCCAGCT GTTCGGCCAC
ACGCCCATCG ACGGGCCGCA TGCGATTGCG GTGCTCGACT CGCTGAGCCT GCTGGGCATG
TCGCCGCTGT TCGCGGCCTT CACGGGCGTG CTGCTGTTCG CCAGCAGCCT GATCGCGGGC
TGGGCGGAGA ACTGGTTCGT GCTGCGCCGG CTGGACTCGG TGATCCGCTA CAACCCCGGC
ATCACGCGCT GGCTGGGCGC CAAGCGTGCC GACCGCTGGG CGCATTTCTG GCGCAAGAAC
ATTTCGGGCT TTGCCGCCAA CGTCTCGCTG GGCATGATGC TGGGCCTGGT GCCCGCGTTC
GCGGCCTTTT TCGGCCTGGG GCTGGAGGTG CGCCACGTCA CGCTGTCGGC AGGCCAGATC
GGTGCCGCCA TGGCGGCCCT GGGCTGGCAG GTGCTGCACT CCGACATGTT CTGGTGGGCG
GTTGCCCTAC TGCCGGTCAA TGGCGCGTTG AATGTCACTG TCAGCTTTTA TCTGGCATTC
CGCGTTGCGA TGAGGGCACA CAATGTCAGC GGAGTCGACC GCTCGCGCAT CTATTCGGCC
ATCCGCCGCC GTCTGCGCAC AGCGCCGCTG AGTTTCTTCC GCCCCTGA
|
|---|
| Protein sequence | MKRITQDLPG LLAALDPEAD LAHRHIWLIH LLEWVRAPKP SVDGAVQRVQ LLVEAVEADP
AVRQRLHAWW LRFIDTVDIT ALLADFGFAP RTNMFSELSE RARYKLLPST PETVDASELF
MLAMPDEFDA RWLHALEAPL LERIALLLTD GSEGQGSSFW QNSLLGSITY CTGQILSTGF
SPELRLRMDE QARDDQPFHA LIHDAESLRV EVMHALRTND RRDAAEARLR ERLDACRAAV
TSVYTHFESE GISVGLVFRL RQLRARILRV RRLLDCLVAD NRATETADLL ANLVSVGIER
RSLRALLSTN TSLLAAKVAE RSAETGEHYI TRTGREYLSM ATKAAGGGFV MAFTTLLKFA
LYALGLSAFW GGLAAGINYS ISFVLIQLLH FTVATKQPAM TAPAMAAKLK DLRASEAIEE
FVDEVAHLVR SQVAAVLGNV LVVLPMVLLL SLGYAQLFGH TPIDGPHAIA VLDSLSLLGM
SPLFAAFTGV LLFASSLIAG WAENWFVLRR LDSVIRYNPG ITRWLGAKRA DRWAHFWRKN
ISGFAANVSL GMMLGLVPAF AAFFGLGLEV RHVTLSAGQI GAAMAALGWQ VLHSDMFWWA
VALLPVNGAL NVTVSFYLAF RVAMRAHNVS GVDRSRIYSA IRRRLRTAPL SFFRP
|
|---|
| |