| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0574 |
|---|
| Symbol | |
|---|
| ID | 5746117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 629801 |
|---|
| End bp | 631693 |
|---|
| Gene Length | 1893 bp |
|---|
| Protein Length | 630 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641295643 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001561605 |
|---|
| Protein GI | 160896023 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component
[COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.305546 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCC CCGTTTCCTC GCAGGCCGCG GCGCCTGCCA AGGCCGCTTC GGGCGGCATC
AGCACGCGCG TGCTCACGGT GGCGGCCATT GCGCTGCTGG CCGCGTCCTG GGGCTTTCTG
CCCGATTTCA CCGTCGTCAT CCTCAGCTAC ATCGGCCTGT TCGCCATGGT GGCCGCAGGC
CTGGTGATGC TGACCGGCGT GGGCGGCATG ACCTCGTTCG GCCAGGCGGC CTTCGTGGGC
ATCGGCGCCT ATGCCACGGC CTGGGTCTGC ACGGCGCCTG CCTCGGTGGC GGCGCTGGGC
GGGCTGGTGG GCGCGGCGGG CCTGCCCTGG GTGGGCCTGG CGCTGGGCCT GCTCATCACC
TTCGTCGTGG CCTGGCTGCT GGGCGCGGTC ACGGTCAAGC TGCAGGGCCA CTACCTGCCG
CTGTGCACCA TCGCCTGGGG GCTGAGCCTG TACTACCTGT TCGGCAACAT GGAGTTCCTG
GGCGGGCAGA CCGGCATCAC GGGCATTGCG CCGCTGGTGA TCGGTGGCGT CTCGCTGGCC
TCGCCGCGCG CCATGGGCGT GGTGATCTGG GCCGTGCTGC TGGTGGCGCT GTGGCTGCTG
CACAACCTGC TGGACTCGCG CGAGGGCCGG GCCATCCGCG CGCTGCGCGG CGGCCGCGTC
ATGGCCGAGT CCATGGGCAT CGACACGGCG CACTACCGCG TCAAGCTCTT CGTGCTGGCG
GCCCTGCTGG CCACGCTGTC GGGCTGGCTC TACGCCCACA TGCAGCGCTT CGTGAGCCCG
GCGCCCTTCA ACCTGAACGT GGGCATCGAG TACCTGTTCA TGGCCGTGGT CGGCGGCGCC
GGCCACCTGT GGGGCGCCGT GCTGGGTGCC ACGCTGATCA CCCTGGTCAA GCAAAAGCTG
CAGGACATAT TGCCGGCCCT GCTGGGCACA AGTGGCAACT TCGAGGTCAT CGTTTTCGGC
CTGCTGATGG TGCTGGTGCT GCAGCGCTTT GCAGAAGGCC TGTGGCCCAC GCTGCAGGCG
CTTACGGCAC GCTGGGTGCG CCGGCCCGTG TCCGATCTGA AGCTGGCGGA CGCGGCGCCG
CTGGCGCAGC GCGCGCTGCC CGCTACGGGC CAGGTGCTGC TGGCGGCCGA GCATGTGACC
AAGCGCTTTG GCGGCCTGGT GGCCAACAAC GATGTGGCCA TGACGCTCAA GGCCGGCGAG
GTGCATGCGC TGATCGGCCC CAACGGCGCG GGCAAGAGCA CCTTCTTCAA CATGATCTCG
GGCGTGGACT CGCCCACCGA GGGCCAGGTC CGCTTCATGG ACCAGGCCAT GAACGATGCG
CCCTCGCGCC GCTTCGCCGC CCTGGGCCTG GGCCGCACTT TCCAGCATGT GCGCCTGCTG
GGCCAGCGCA GCGTGCTGGA GAACGTGGCG GTGGGCGCGC ACCGGCGCGC GCACCGGGGC
TGGCTGGCCT CCATGCTGCG CCTGGACCGG GCCGAGGAGG CCTCGGTGCT GGCCGAGGCG
CGCCGCCAGA TCGAGCGCTG CGGCCTGGGC GCCTTCGCCG ACGTGCCGGC CGCCTCGCTG
GCCCTGGGCC AGCAGCGCAT CGTGGAGATC GCACGCGCCC TGGCCGGACA GCCTGCTGCC
CTGCTGCTGG ACGAGCCGGC CGCCGGCCTG CGCCACCTGG AAAAACAGGC CCTGGCCGAC
CTGCTGCGCC AGCTGCGCGC CGAGGGGCTG GGCATTCTCG TCGTCGAGCA CGACATGGAG
TTCGTCATGA ATCTTGCGGA CCGCATCACG GTGCTGGAGT TCGGCACCGT GATTGCCGAA
GGCACGCCGG CCCAGATCCA GGTCAACCAG CGCGTGCTGG ATGCCTACCT GGGCGGCGGC
GACGACGACG AGGCAACCGG AGAGACGGCA TGA
|
|---|
| Protein sequence | MSAPVSSQAA APAKAASGGI STRVLTVAAI ALLAASWGFL PDFTVVILSY IGLFAMVAAG
LVMLTGVGGM TSFGQAAFVG IGAYATAWVC TAPASVAALG GLVGAAGLPW VGLALGLLIT
FVVAWLLGAV TVKLQGHYLP LCTIAWGLSL YYLFGNMEFL GGQTGITGIA PLVIGGVSLA
SPRAMGVVIW AVLLVALWLL HNLLDSREGR AIRALRGGRV MAESMGIDTA HYRVKLFVLA
ALLATLSGWL YAHMQRFVSP APFNLNVGIE YLFMAVVGGA GHLWGAVLGA TLITLVKQKL
QDILPALLGT SGNFEVIVFG LLMVLVLQRF AEGLWPTLQA LTARWVRRPV SDLKLADAAP
LAQRALPATG QVLLAAEHVT KRFGGLVANN DVAMTLKAGE VHALIGPNGA GKSTFFNMIS
GVDSPTEGQV RFMDQAMNDA PSRRFAALGL GRTFQHVRLL GQRSVLENVA VGAHRRAHRG
WLASMLRLDR AEEASVLAEA RRQIERCGLG AFADVPAASL ALGQQRIVEI ARALAGQPAA
LLLDEPAAGL RHLEKQALAD LLRQLRAEGL GILVVEHDME FVMNLADRIT VLEFGTVIAE
GTPAQIQVNQ RVLDAYLGGG DDDEATGETA
|
|---|
| |