| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0521 |
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| Symbol | |
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| ID | 5746064 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 559053 |
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| End bp | 562877 |
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| Gene Length | 3825 bp |
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| Protein Length | 1274 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641295590 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_001561552 |
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| Protein GI | 160895970 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.000558508 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCGCGA GCGAAATGAT CGGCGACGTG ACCAGCCATG TGCTCGACGC GCAGCGCTTC
CCGCTGTGGG GCAGCCGCCT GATCGAGGCC AGCGCCGGCA CCGGCAAGAC CTGGACCATC
GCCGCGCTCT ACCTGCGCCT GGTGCTGGGG CATGGCGAGG GCAGCCTGGA CGGCATCAGC
AGCACGGCCT TCGAGCGCCC GCTGATGCCG CCAGACATCC TCGTCATGAC CTTCACGCGC
GCGGCCACGC GCGAGCTGTC CGACCGCATA CGCAAGCGCC TGATCGAGGC CGTGCAGTGC
TTTCGCGGCG AGGCCGAGCC CGCGCCCCAC GACGCCTTCC TGCACGCGCT GCGCGAGGCC
TACCCCGAAG GCGCGGCCCG TGAACGCGCG GCCTGGCGCC TGGCCATGGC GGCCGAATGC
ATGGACGACG CGGCCATCCA CACCATCGAC GCCTGGTGCC AGCGCATGCT GCGCGAGCAT
GCCTTCGACA GCGGCAACCT CTTCGACGAA ACGCTGGAGC CCGACGAAAG CCAGCGCCAG
ACCGAGGCCG CGCAGGACTA CTGGCGCCAG CAGTGCTACC CGCTGTCCGA CGAGTTGCTG
GACGAGGTCC TGAAGATCTG GCCCCACGTC GGCGCCCTGG TCGATGACAT GCGCGCCCTG
CTGCGCGAGC CCCCCGTGCC CGGCGCGGGC GAGGGCAGCC TGGCCGACTG CCTGCAGCGC
GCCATGGAGC AGCGCCGCAG CCGCCTGCTG GCCCTGGCGG CCGGCTGGGA CGACAAGGCA
CAGCGCCTGC AGCTGTGGCT GGATGGACAG CTCGACGGCC ATGGCGCGCT GTGGGACAAG
CGCAAGCTGC AGCCCGCGCG CTACACCGGC TGGCTGGCCG CGCTGGCCGA CTGGTCGCGC
GCGCCGCTGG ACGGTCCGCT GGCGCTGACC GAGGCCGCGC GCCACCGCCT CAGCCCCGAG
GGCCTGGCCG AGGCCTTCAA GGGATCGGCC GGCGATGTGC TGATGCCGCT GGAGCTGGCC
GAGCTGCAGG CGCTGCTGCT GCAGCTGGAG CAATTGCCGC CCGTCAGCGT GGCCGTGCGC
CTGCATGCGG CCGCGCGCGT GGCGCAGCGG CTGGCCCACC TCAAGCGCCA GGCCGGCAGC
TTCGGCTTTG CCGACATGCT GCAGCGCCTG GACACGGCCC TGGCCGGCGA CAACGGCGCT
GTGCTGCGCG AGCGCATCCT GGCCCAGTAC CCGGTGGCGT TGATCGATGA ATTCCAGGAT
ACCTCGCCGC TGCAGTACCG CCTGTTCGAC CAGATCTACC GCACGGCGGC CAACGACCCG
CACAGCGCCC TGCTGCTGAT CGGCGACCCC AAGCAGTCCA TCTACGGCTT TCGCGGCGCC
GACATCCACA GCTACCTGCA GGCGCGCCGC GCCACCGAGG GCCGCCACTA CGTGCTGGGC
ACCAACTACC GCTCCACCGA GGCGCTGGTG GGCGCCGTCA ACCATTGGTT CGCGCAGGCC
GAGCAGCGCT CGGGCGAGGG CGCCTTCATG TTCCGGCGCG GCAGCCACAA CCCGCTGCCG
TTCGAGCCCG TGGCTGCCCA GGGGCGCAGC GAACAGCTGC ACACGCGCGA CGGCGCCATG
CACGCCCTCA CCGTGGCCTG GAGTGCGGGC CGCGACGAGG ACACCGGCAT CCCCCTGCCT
TTGGCGGCCG ACGAGGTGCG GCGGCGCTTT GCGGCCCATT GCGCCGAGCA GATCGTGCAG
TGGCTGACCG ACCCGCAGGC CGGCTTTGTG CAGCCCGATG GCCGCCTTGT GCGCCTGCGG
CCTGCCGACA TCGCCGTGCT GGTGCGCACG GGCCGAGAGG CGGCCGCCGT GCGCCGAGAG
CTGCAGGCGC GCGCCGTGGC CTCGGTCTAC CTGTCGGACC AGGATTCGGT GTTCGCCAGC
GACGAGGCCC ATGACCTGCT GTACTGGCTG CGCGCCGTTG CCGCGCCGCT GGATGCCCAG
GCCGTGCGCG CGGGCCTGGC CACGCGGCTC ATCGGCCTGT CGCTGGACGA GCTGGCCTGG
CTGGCCGCCG ACGAGGAAGC CTTTGACGCG CGCAGCGAGC AGCTGCGCGA ACTGCACAGC
ATCTGGCTGC GCCTGGGCGT GCTGGCCATG CTGCGCCAGA CCCTGTACCG GCTGGACCTG
CCCGTGCGCT GGCTGCAGGA CCCGGCCATG GGCGGCGAGC GGCGCCTGAC CAACTACCTG
CACCTGGCCG AGCTGCTGCA GACCGCCAGC GCGCAGCTGG AGGGCGAGCA GGCCCTGATC
CGCTGGCTGG CCACCCAGAT CGAGACGCCG GGCAGCGGCA GCGAAGAGCA GGTGGTGCGC
CTGGAAAGCG ATGCCGACCT GGTCAAGCTC GTCACCGTGC ACAAGAGCAA GGGCCTGGAG
TACCCGCTGG TCTGCCTGCC GTTTGCGGGC AGCTTCCGCC CCATGGAACG GGCCAGGACG
CCCTTCCTGA CCCTGTCCGC GCAGGACGAG TCGCAAGACG ACGCGGCTCC GGCCCGCCGA
TTGCTGCTGG ACTTCAGCGA CGAGGAGCTT GCCCAGGCCG ACCGCGAGCG GCTGCGCGAG
GACCTGCGCC TGTTCTACGT GGCGCTCACC CGCCCGCGCC ATGCGCTGTG GCTGGGTCTG
GCTCCGCTCA AGCGCGGCAA CGGCAAGGCC TGCGTGAACG AGCAGGGCGC AGCCGGCTAC
CTGCTGGGCG GCACCGAGCC GCGCTCGGCC CAGGGCTGGC GCGACGGCCT GCAGCAGCTG
TGCGGCGAAG ACCCGCACAT GGCCTGGCGC GACCTGGATG CCGTGCCACT GCAGCGCACG
CGCTGGCAGC CCCCGGCCGG CGCCACGCCG CTGCACGATG CCCCGGCCTA CGACGCGCGC
TTCGACACCC GCTGGGGCAT CGGCAGCTTC TCTGCCCTGG TGCGCGCCAT GGCCGCGCCC
AGCCTGCCCG TGCTGCCCGT GGCCGTGCAG CGCCCGGCCG AGGATGAGCA GGCGCTGGAG
CCGCCGCCAT CGCCGGAACT GGCGGACATT GCCGGCCTGG CGGGCCTGCA GCCCCTGCAG
GATGGACCGG CCGGCGGGCC TGCGGTCTGG CACCGCTTTT TGCGCGGCCC CGTGGTCGGC
AACTTCGTGC ACGACCAGCT GGAATGGCTG GGCGGCGAAG ACTTTGCCCT GCCCGTGGAC
GGCCAGGGTG CGCTCGCTGA TCGCCTGGTG CGCCGCTGCG AGCGCGCGGG CCGTGGCGAG
CAGGCGCGCG ACCTGCTGGC CTGGCTCACG GCTGTGGTCC ACCAGCCGCT GGCGCCGCTC
GATGTCACGC TGGCCACGCT GGGCCCGCAA CTGTCCGAGA TGGAGTTCTG GCTGCCCGCG
CGCCAGCTGC CGGCCGAGCG CATCGACCAG CTGTGCCGGC GCTTCATCCT GCCGGGGCAG
GAGCGGCCCG CGCTGCCCCA GCGCTCGCTG CACGGCATGC TCATGGGCTT TGCCGACCTG
GTGTTCTGCC ACGAGGGCCG CTACTGGGTG CTTGACTACA AGAGCAACCA CCTGGGCCCG
GACGGTGCCG CCTACGGCCA GGAGGCCCTG GCCCGCGCCA TGCTCCACCA CCGCTACGAC
GTGCAGGCCG CGCTCTATCT GCTGGCCCTG CACCGGCTGC TGCGCAGCCG CCTGGGCACG
GCCTACGAGC CGCAGCGCCA GCTGGGCGGC GCGCTGTACT ACTTTTTGCG CGGCATCGAT
GGCCCGGCCG GTGGCATGCA TGCCATGGCG CCCGAGCTGC CCCTGCTCGA TGCGCTCGAT
GAACTGCTCG GCCCCGGCCG CGCCGATATC CAGGAGCCGC CATGA
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| Protein sequence | MSASEMIGDV TSHVLDAQRF PLWGSRLIEA SAGTGKTWTI AALYLRLVLG HGEGSLDGIS
STAFERPLMP PDILVMTFTR AATRELSDRI RKRLIEAVQC FRGEAEPAPH DAFLHALREA
YPEGAARERA AWRLAMAAEC MDDAAIHTID AWCQRMLREH AFDSGNLFDE TLEPDESQRQ
TEAAQDYWRQ QCYPLSDELL DEVLKIWPHV GALVDDMRAL LREPPVPGAG EGSLADCLQR
AMEQRRSRLL ALAAGWDDKA QRLQLWLDGQ LDGHGALWDK RKLQPARYTG WLAALADWSR
APLDGPLALT EAARHRLSPE GLAEAFKGSA GDVLMPLELA ELQALLLQLE QLPPVSVAVR
LHAAARVAQR LAHLKRQAGS FGFADMLQRL DTALAGDNGA VLRERILAQY PVALIDEFQD
TSPLQYRLFD QIYRTAANDP HSALLLIGDP KQSIYGFRGA DIHSYLQARR ATEGRHYVLG
TNYRSTEALV GAVNHWFAQA EQRSGEGAFM FRRGSHNPLP FEPVAAQGRS EQLHTRDGAM
HALTVAWSAG RDEDTGIPLP LAADEVRRRF AAHCAEQIVQ WLTDPQAGFV QPDGRLVRLR
PADIAVLVRT GREAAAVRRE LQARAVASVY LSDQDSVFAS DEAHDLLYWL RAVAAPLDAQ
AVRAGLATRL IGLSLDELAW LAADEEAFDA RSEQLRELHS IWLRLGVLAM LRQTLYRLDL
PVRWLQDPAM GGERRLTNYL HLAELLQTAS AQLEGEQALI RWLATQIETP GSGSEEQVVR
LESDADLVKL VTVHKSKGLE YPLVCLPFAG SFRPMERART PFLTLSAQDE SQDDAAPARR
LLLDFSDEEL AQADRERLRE DLRLFYVALT RPRHALWLGL APLKRGNGKA CVNEQGAAGY
LLGGTEPRSA QGWRDGLQQL CGEDPHMAWR DLDAVPLQRT RWQPPAGATP LHDAPAYDAR
FDTRWGIGSF SALVRAMAAP SLPVLPVAVQ RPAEDEQALE PPPSPELADI AGLAGLQPLQ
DGPAGGPAVW HRFLRGPVVG NFVHDQLEWL GGEDFALPVD GQGALADRLV RRCERAGRGE
QARDLLAWLT AVVHQPLAPL DVTLATLGPQ LSEMEFWLPA RQLPAERIDQ LCRRFILPGQ
ERPALPQRSL HGMLMGFADL VFCHEGRYWV LDYKSNHLGP DGAAYGQEAL ARAMLHHRYD
VQAALYLLAL HRLLRSRLGT AYEPQRQLGG ALYYFLRGID GPAGGMHAMA PELPLLDALD
ELLGPGRADI QEPP
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