Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_0500 |
Symbol | |
ID | 5746037 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 528529 |
End bp | 531684 |
Gene Length | 3156 bp |
Protein Length | 1051 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641295563 |
Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
Protein accession | YP_001561531 |
Protein GI | 160895949 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAAGT TCTTTATCGA CAGACCGATC TTTGCATGGG TCGTCGCGCT ATTCATCATC GTCCTCGGTG GTATCGCGCT GACCAAGCTT CCGATCGCTC AATACCCTAA GGTGGCTCCT CCGGCCATCG TCATCAACAC CGCCTACCCA GGCGCGTCCG CCAAGGTGCT CGAAGACAGC GTGCTGTCCG TGATCGAGCG CGAGATGAAC GGCTCGCCCG GTCTGGTCTA CATGGAGTCG GTGGCCCAGG CCGATGGCAC GGGCAGCATC ACCATCAGCT TCGAGGCTGG CACCAACGTG GACCTGGCGC AGGTGGACGT GCAAAACCGC CTGTCGCGCG CCACGCCGCG CCTGCCTGCG TCCGTGACGC AGCAGGGCGT GCGCGTGGAC AAGGCGTCGT CCAACTTCCT GCTGTTCATC ATGCTGTCGT CCGAGGACGC CAAGGCCTAT GACACGGTGG CCTTGGGCGA CTATGCCTCG CGCAACATCG TGCCCGAAAT CCAGCGTGTG GCCGGCGTGG GCCAGGCACA GCTGTTCGGT ACCGAAAAGG CGATGCGCAT CTGGTTCGAT CCCGCCAAGC TGCAGGGCTA CAAGCTCTCG GCCGAGGACG TGACGGCCGC CATCCGCAGC CAGAACGCCC AGGTGGCCAG CGGCGCCATC GGCGACCTGC CCAACATCAC GGGCCAGAAG ATCGCCGCCA CGGTGACGGT GATGGGCCAG CTGTCTTCGA TCGGCCAGTT CGAGAACATC GTGCTGCGCG CCAATCCCGA TGGCTCCACC GTGCGCCTCA AGGACGTGGC GACCGTCGAG ATCGGCGGCC AGGCCTACGC GACCTCCGCC CGCCTGAACG GCAAGGATGC CGTGGGTATC GGCGTCCAGC TGACGCCCAG CGGCAATGCG CTGGCGACCG CCAAGGCCGT GCATGCGCGC ATGGAAGAGC TGCAGAAGTT CTTCCCCAAG GGCGTGAAGT ACTCCATTCC CTACGACAGC TCCAAGTTCG TGAGCATCTC CATCGAGAAG GTCGCCCACA CGCTGCTGGA AGCCATCGTG CTGGTGTTCC TGGTGATGTT CCTGTTCCTG CAGAACTGGC GCTACACGCT GATCCCGACC ATCGTGGTGC CCATTGCACT GCTGGGCACC TTCGCGGTCA TGCAGGCCGT GGGCTTCTCG ATCAACGTGC TGGCCATGTT CGGCATGGTG CTGGTCATCG GCATCGTGGT GGATGACGCC ATCGTGGTGG TGGAGAACGT CGAGCGCATC ATGAGCGAGG AAGGCCTGCA GCCGCGCGAG GCCGCGATCA AGGCCATGGG CCAGATCTCG GGCGCCATCG TGGGCATTAC GCTGGTGCTG ATCGCGGTGT TCATACCGCT GGCCTTCTTC GCGGGGTCCA CCGGCAATAT CTACCGGCAG TTCTCCATCG TGATGGTGGC CTCCATCAGC TTCTCGGCCT TCATGGCGCT GACGCTGACA CCGGCCCTGT GCGCAACGCT GCTCAAGCCC GTGGAAGCCG GTCACCACCA CGAGAAGAAG GGCTTCTTCG GCTGGTTCAA CCGCACGTTC GCACGCTCGG CCAAGTCCTA CGAGGGCTGG GTGGCCCGAC TGCTCAAGCG TTCGGTGCTG ATGATCGGCG TGTACCTGGC CGTGATCGCG GGCGCCGTGG TGGTGTTCCG TGGCCTGCCG ACCTCGTTCC TGCCGACCGA GGACCAGGGC TACTTCATCG TCAACGTGCA ACTGCCCCCT GGCGCCGCCA AGGAGCGCAC GCTGGAGGTG ATGAAGCAGG TGGAAGAAGC CGTGCTGCCG CAGCCCGAAG TGGCCAACAT GGTCAGCGTG CTGGGCTTCA GCTTCTCCGG CCAGGGCCAG AACGCCGCCC TCGCCTTCGT GCCGCTCAAG GACTGGTCCG AGCGCAAGGG AGCGAACTCC ACGGTGGACG CCATGACGGG CCGCATCATG GGCATGACGT CGGGCATCCG CGATGCCTTC GTGTTCGCCG TGAACCCGCC GCCCATTCCC GAACTGGGCA ACGCCGTGGG CTTCTCGTTC CGCCTGCAGG ACCGTGCCGG CCACGGGCAC GATGCGCTGA TCAATGCCCG CAACATGATG CTGGGCATGG CCGGGCAGAG CAAGGTGCTG GCCGGCGTGC GTCCCGATGG TCTGGAGGAC GCGCCCCAGC TGCGCATCGA GATCGACCGC GACAAGGCCA ACGCCCTGGG CGTGGACTTC ACCTCGATCA ATGCCGCGCT GTCCACGGCG CTGGGCTCGT CCTACGTCAA TGACTTCCCC AACCAGGGTC GTCTGCAGCG CGTGATCGTG CAGGCCGATG CTCCGGCCCG CATGCAGCCC GACGACCTGC TGCGCCTGAA CGCGCGCAAT GCCAAGGGCG ATCCGGTGCC GCTGTCCACG TTCGCGACCA CCAAGTGGGT CAAGGGCGCC CAGCAGACGG TGCGCTACAA CGGCTACCCT GCCGTGCGCA TCGAAGGCTC GGCCGCACCG GGCTTCAGCT CGGGCGATGC CATGGACGAG ATGGAAAAGC TGGCTGCCAA GCTGCCCGAA GGCTTCGGCT TCGAGTGGAC CGGCCAGTCG CGCGAGGAAA AGCTGGCGGG CTCGCAAGCC ATCTTCCTGT ACGCCTTCGC CATCCTGGCC GTGTTCCTGT GCCTGGCCGC CCTGTACGAG AGCTGGTCGA TTCCGCTGTC GGTGATTCTG GTCGTGCCGC TGGGTCTGCT GGGTGTGGTG CTTGCCACCT TGCTGCGCAA CTACTCCAAC GACGTGTACT TCCAGATCGG ACTGGTGACG GTGATCGGCC TGTCGGCGAA GAACGCGATC TTGATCGTGG AGTTCGCCAA GGACCTGCAG GCCGAAGGCA AGGGACTGAT CGAGGCTGCG CTGGAAGCCG CCCACCTGCG GTTCCGCCCC ATCATCATGA CCTCGCTGGC CTTCGGCCTG GGCGTGGTGC CTCTGGTGAT CGCCACGGGC GCGAGCTCGG CCAGCCAGCG TGCCATCGGC ACCGGCGTGC TCGGCGGCAT GATCACCGGC ACCGTGCTGG CCGTGCTGTT CGTGCCCACC TTCTTCGTCG TGGTGCGCAA GCTGTTCAAG GGCAAGATCA AAACGCACAA CCCGCCGTCC ACACCGGCCG GCAAGGAGGC CTTGAGCCAT GATTAA
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Protein sequence | MAKFFIDRPI FAWVVALFII VLGGIALTKL PIAQYPKVAP PAIVINTAYP GASAKVLEDS VLSVIEREMN GSPGLVYMES VAQADGTGSI TISFEAGTNV DLAQVDVQNR LSRATPRLPA SVTQQGVRVD KASSNFLLFI MLSSEDAKAY DTVALGDYAS RNIVPEIQRV AGVGQAQLFG TEKAMRIWFD PAKLQGYKLS AEDVTAAIRS QNAQVASGAI GDLPNITGQK IAATVTVMGQ LSSIGQFENI VLRANPDGST VRLKDVATVE IGGQAYATSA RLNGKDAVGI GVQLTPSGNA LATAKAVHAR MEELQKFFPK GVKYSIPYDS SKFVSISIEK VAHTLLEAIV LVFLVMFLFL QNWRYTLIPT IVVPIALLGT FAVMQAVGFS INVLAMFGMV LVIGIVVDDA IVVVENVERI MSEEGLQPRE AAIKAMGQIS GAIVGITLVL IAVFIPLAFF AGSTGNIYRQ FSIVMVASIS FSAFMALTLT PALCATLLKP VEAGHHHEKK GFFGWFNRTF ARSAKSYEGW VARLLKRSVL MIGVYLAVIA GAVVVFRGLP TSFLPTEDQG YFIVNVQLPP GAAKERTLEV MKQVEEAVLP QPEVANMVSV LGFSFSGQGQ NAALAFVPLK DWSERKGANS TVDAMTGRIM GMTSGIRDAF VFAVNPPPIP ELGNAVGFSF RLQDRAGHGH DALINARNMM LGMAGQSKVL AGVRPDGLED APQLRIEIDR DKANALGVDF TSINAALSTA LGSSYVNDFP NQGRLQRVIV QADAPARMQP DDLLRLNARN AKGDPVPLST FATTKWVKGA QQTVRYNGYP AVRIEGSAAP GFSSGDAMDE MEKLAAKLPE GFGFEWTGQS REEKLAGSQA IFLYAFAILA VFLCLAALYE SWSIPLSVIL VVPLGLLGVV LATLLRNYSN DVYFQIGLVT VIGLSAKNAI LIVEFAKDLQ AEGKGLIEAA LEAAHLRFRP IIMTSLAFGL GVVPLVIATG ASSASQRAIG TGVLGGMITG TVLAVLFVPT FFVVVRKLFK GKIKTHNPPS TPAGKEALSH D
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