Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_0440 |
Symbol | |
ID | 5745977 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 470074 |
End bp | 472095 |
Gene Length | 2022 bp |
Protein Length | 673 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641295503 |
Product | conjugal transfer coupling protein TraG |
Protein accession | YP_001561471 |
Protein GI | 160895889 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGGGA CGAACGTGCT GTTCGGTCAG ATCGCCGTGG TATTCGGCAT CGTGATCGCT GGCGTATGGA GCGCCACGCA ATGGACAGCA GCAGCCCTTG GCTACCAGCT ACGCCTTGGC TCGCCCTGGT TCGATCTTCT CGGCACACCG ATCTACCACC CGTGGAAACT GTTCGAGTGG TGGTTCTTCT TCGATGCCTA CGCGCCGCGC GTGTTCGATA CCGGCGGCGC CATCGCGGGC GGCAGTGGCC TGCTGGCGGT GGTGGTCGCC ATCGGTATGT CGATCTGGCG CTCGCGCCAA TCGCGGCTGG TTACGACCTA CGGCTCGGCA CGCTGGGCGA ACGCGGATGA CATTCGCAAG GCTGGCCTCA CGCAGCCGGC CGGCGTGTTC CTCGGCCAGC ACGACCGCCA GTACCTGCGG CATGAAGGCC CGGAACACGT CCTGACCTTC GCGCCCACGC GCTCGGGCAA AGGTGTGGGC CTGGTGGTGC CGACGCTGCT TTCCTGGCCA GCCTCGGCCG TCATCCACGA CATCAAGGGC GAGAACTGGC AGATCACCGC CGGTTGGCGC TCGCGCTTCT CGCATTGCCT GCTGTTCAAC CCGACCGATG CGAAGTCAGC GGCCTACAAC CCGCTGCTGG AGGTACGGCG CGGCGCGCAT GAGGTGCGCG ACGTGCAGAA CATCGCGGAC ATTCTGGTTG ATCCCGAAGG TGCGCTGGAG AAGCGCAACC ATTGGGAAAA GACCTCGCAC GCGCTACTGG TTGGGGCCAT CCTGCATGTG CTCTACGCAG GCGAAGACAA GACTCTGCGC GGCGTCGCCA ACTTCCTCTC CGACCCGGCC AGTCCGTTCG AGCTGACCTT GCATCGGATG ATGACTACGC CGCACCTCGT GAACGAGGAA GGTGGTGGCC CACATCCCGT GGTGGCATCC GCTGCGCGCG AAGTCCTCAA CAAGAGCGAT AACGAACGCT CGGGCGTGCT GTCCACGGCC ATGTCGTTCC TCGGCCTGTA CCGCGATCCC ACGGTGGCCG AAGTCACCTC GCGTTGCGAT TGGCGCATCG CTGACCTGAT CGCTGCCGAG CATCCGGTAT CGCTGTACCT CGTGGTGCCG CCTTCGGACA TTTCGCGGAC GAAGCCGCTC ATTCGCCTGA TCCTCAACCA GATCGGCCGG CGCCTCACCG AATCGCTCGA CGGCTCCGAC GGCATTCAGC GCCGCCACAA GCTGCTGCTG ATGCTCGATG AGTTCCCGGC GCTGGGGCGG CTCGACTTCT TCGAGACGGC CCTGGCCTTC ATGGCGGGCT ACGGCATCCG CAGCTTCCTC ATCGCGCAGT CGCTCAACCA GATCGACAAA GCCTATGGCC AGAACCATTC GATTCTGGAC AACTGCCATG TGCGCGTGAC GTTCGCCACG AACGACGAGC GCACGGCCAA GCGCATTTCC GAAACGCTCG GCACCGCTAC CGAGCTGCGC GCGCAGCGCA ACTACGCGGG CCATCGGCTC GCGCCGTGGC TGGGCCACCT GATGGTGTCG CGCCAGGAAA CCGCGCGCCC GCTGCTGACG CCGGGCGAAG TCATGCAGCT TCCGCCTGAC GAGGCCGTGG TGATGGTGTC CAGCGTGGCG CCGATCAAGG CGAAGAAGCT GCGCTACTAC GCGGACGCCA ATTTCAAGCG TCGCGTGCTG CCACCGCCCG CGCTGGCGGA TGGGCAGTAC GCCGACGCGC CGCCATTGCG GCCCGACGAC TGGAGCGGGT TGGCGATTCC GTCCGTGCCC GCTGCACTGG CCGCCGCGTC CGCTGATGGC CTGGAGAACT TGGGTTCGGC CGACGACGGC GGCCCGCGCC GTCAGCCCGA ACTCTCCGAA ACCGTCGCCT ACGACTCCGA GCTGGCCGCT CCCACGGCCG ACCTCGCGCT GCTCGATGAC GACGACGACC TGCCGCTTCC CCTTCCTCGC CAGCTTGATC CGGCCATGCA GCGCAGCGCC CGGCTGGCTT CCCTCGACCC CAACGACGGA ATCGAGCTAT GA
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Protein sequence | MQGTNVLFGQ IAVVFGIVIA GVWSATQWTA AALGYQLRLG SPWFDLLGTP IYHPWKLFEW WFFFDAYAPR VFDTGGAIAG GSGLLAVVVA IGMSIWRSRQ SRLVTTYGSA RWANADDIRK AGLTQPAGVF LGQHDRQYLR HEGPEHVLTF APTRSGKGVG LVVPTLLSWP ASAVIHDIKG ENWQITAGWR SRFSHCLLFN PTDAKSAAYN PLLEVRRGAH EVRDVQNIAD ILVDPEGALE KRNHWEKTSH ALLVGAILHV LYAGEDKTLR GVANFLSDPA SPFELTLHRM MTTPHLVNEE GGGPHPVVAS AAREVLNKSD NERSGVLSTA MSFLGLYRDP TVAEVTSRCD WRIADLIAAE HPVSLYLVVP PSDISRTKPL IRLILNQIGR RLTESLDGSD GIQRRHKLLL MLDEFPALGR LDFFETALAF MAGYGIRSFL IAQSLNQIDK AYGQNHSILD NCHVRVTFAT NDERTAKRIS ETLGTATELR AQRNYAGHRL APWLGHLMVS RQETARPLLT PGEVMQLPPD EAVVMVSSVA PIKAKKLRYY ADANFKRRVL PPPALADGQY ADAPPLRPDD WSGLAIPSVP AALAAASADG LENLGSADDG GPRRQPELSE TVAYDSELAA PTADLALLDD DDDLPLPLPR QLDPAMQRSA RLASLDPNDG IEL
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