Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_0397 |
Symbol | rpsC |
ID | 5745934 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 436967 |
End bp | 437839 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641295460 |
Product | 30S ribosomal protein S3 |
Protein accession | YP_001561428 |
Protein GI | 160895846 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0092] Ribosomal protein S3 |
TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.26331 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 60 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGACAGA AAATCCATCC TACCGGCTTC CGCCTGGCTG TTAGCCGCAA CTGGGCCAGC CGTTGGTACG CAAGCAACCG TGACTTCGCC GGCATGCTGG CCGAAGACAT CAAGGTGCGC GAGTTCCTGA AGGCCAAGCT GAAGAATGCC GCCGTGTCGC GCATCCTGAT CGAGCGTCCT GCAAAGAACG CCCGCATCAC GATCTTCTCG GCACGTCCTG GTGTCGTGAT CGGCAAGAAG GGCGAGGACA TCGAGAACCT GAAGAAGGAA CTCGCAACCC GTCTGGGCGT GCCCGTGGCT GTGAACATCG AAGAAGTGCG CAAGCCTGAA ATCGATGCCA AGCTGATCGC CGATTCGATC TGCCAGCAGC TCGAAAAGCG CATCATGTTC CGCCGCGCCA TGAAGCGTGC AATGCAAAAC GCCATGCGTC TGGGTGCCCA AGGCATCAAG ATCATGTCTT CGGGCCGTCT GAACGGTATC GAAATTGCAC GTTGCGAGTG GTATCGCGAA GGCCGTGTGC CACTTCACAC ACTGCGCGCC GACATCGACT ATGGCTTCTC CGAAGCCAAG ACGACCTACG GCGTGATCGG TGTGAAGGTC TGGGTCTACA AGGGTGACAC GCTGGGTCGT AACGACCTGC CGGCAGCCGA GACCCCCCGC CCCGAAGAAG AACGTCGTCC TCGCGGCCCC CGCCGTGATG GTCGCGGCGA TGGTCGTCGT GACGGTGCTG GCCGTGGTGC CCGCCGCCCC GCAGGCGCTA ACGCAGCACC TGCTGACGGC AGCGATAAGC CCGCCGGCGC TGGCGCTGAT TCCGTTAAGC GCGTTCGCAA GACTGACGCG CCCGCTACAG CAGCGGACGG TAAAGGAGAA TAA
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Protein sequence | MGQKIHPTGF RLAVSRNWAS RWYASNRDFA GMLAEDIKVR EFLKAKLKNA AVSRILIERP AKNARITIFS ARPGVVIGKK GEDIENLKKE LATRLGVPVA VNIEEVRKPE IDAKLIADSI CQQLEKRIMF RRAMKRAMQN AMRLGAQGIK IMSSGRLNGI EIARCEWYRE GRVPLHTLRA DIDYGFSEAK TTYGVIGVKV WVYKGDTLGR NDLPAAETPR PEEERRPRGP RRDGRGDGRR DGAGRGARRP AGANAAPADG SDKPAGAGAD SVKRVRKTDA PATAADGKGE
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