Gene Daci_0316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_0316 
Symbol 
ID5745853 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp356439 
End bp357377 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content64% 
IMG OID641295379 
Productbranched-chain amino acid aminotransferase 
Protein accessionYP_001561347 
Protein GI160895765 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 
TIGRFAM ID[TIGR01122] branched-chain amino acid aminotransferase, group I 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCCCG TTGTTCCCTC GATGGCCGAC CGTGACGGCA AGATCTGGAT GGATGGCCAG 
CTGGTGGACT GGCGCGATGC CAAGATCCAT GTGCTGACCC ACACGCTGCA CTACGGCTGC
GGCGCATTCG AGGGCGTGCG GGCCTACAAG TCCGAACAGG GCACGGCCAT CTTCCGCCTG
GAAGACCACA CCAAGCGCCT GTTCAACAGC GCCAAGATCC TGCGCATGCA GATCCCGTTC
ACCCAGGAAG TGGTGAACCA GGCCCAGGTC GAGGTCGTGC GCGCCAACCA GCTGGAATCG
TGCTACCTGC GTCCGCTGAC CTGGATCGGC GACCGCAAGC TGGGCGTCTC CCCCAAGGGC
AACACCATCC ACCTGATGGT TGCAGCCTGG GCCTGGGGCG CCTACCTGGG CGAAGAAGGC
ATGCAGCGCG GCATCCGCGT GAAGATCTCC AGCTTCACGC GCCACCATGT GAACATCACC
ATGAGCCAGG CCAAGGCGGT GAGCAACTAC ACCAACTCCA TCCTGGCCAA CACCGAGGCG
TTGGACGACG GCTATGACGA GGCCATCCTG CTGGACGCCT CGGGCTTCGT CTCCGAAGGC
TCGGGCGAGA ACATCTTCGT CATCAAGGAC GGCGTGGTCT ACACGCCCGA CCTGTCGGCC
GGCGCGCTCA ACGGCATCAC GCGCAACACC GTGATGCACA TCTGCAAGGA CCTGGGCCTG
GAAGTGGTGC AAAAGCGCAT CACGCGCGAC GAGCTGTACA TCGCCGATGA AGTCTTCTTC
ACCGGCACGG CCGCCGAAGT CACGCCCATC CGCGAGGTAG ACCGCATCGA GATCGGCGCG
GGCAGCCGCG GCCCCCTCAC CGAAAAGATC CAGCAGGCCT TCTTTGACAT CGTCAACGGC
CGCAACCCCA AGTACGCCCA TTGGCTGACT CGGGTCTGA
 
Protein sequence
MSPVVPSMAD RDGKIWMDGQ LVDWRDAKIH VLTHTLHYGC GAFEGVRAYK SEQGTAIFRL 
EDHTKRLFNS AKILRMQIPF TQEVVNQAQV EVVRANQLES CYLRPLTWIG DRKLGVSPKG
NTIHLMVAAW AWGAYLGEEG MQRGIRVKIS SFTRHHVNIT MSQAKAVSNY TNSILANTEA
LDDGYDEAIL LDASGFVSEG SGENIFVIKD GVVYTPDLSA GALNGITRNT VMHICKDLGL
EVVQKRITRD ELYIADEVFF TGTAAEVTPI REVDRIEIGA GSRGPLTEKI QQAFFDIVNG
RNPKYAHWLT RV