| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0300 |
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| Symbol | |
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| ID | 5745836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 338605 |
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| End bp | 340989 |
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| Gene Length | 2385 bp |
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| Protein Length | 794 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641295362 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001561331 |
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| Protein GI | 160895749 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACGCA GAGTCACCAT ACACACGCCA TTGGGCGAGC AGCTGCATTT CCGTGAATTG
CGCGGCCAGG AAAACATCAG CCAACTCTTC AGCCTCGATG TGGAAATGCT CAGCGAAAGC
GAAAGCATCG ATCCCAAGGC CCTATTGGGT AAAAACGCCA CCATAGAAAT AGAAACCCAG
GGCGGCGGCA GGCGCTTCAT CGACGGCATC GTCACCCGCT TCGGCATGCA GGGCCAGGAC
CACCGCCACT ACGCCTACAA GGCCCGCCTG AGCCCCTGGC TGTGGCTGGC CACGCGCAAG
AGCGACTTTC GCATCTTCCA GAACCAGACC GTGCCCGACA TCATCGAGCA GGTATTGGGC
GTCTATGGCC ATCCATTGCA AAGGAAACTC ACGCGCGCCT ATCGCAGTTG GGATTACTGC
GTGCAATACA ACGAAAGCGA TTGCGACTTT GTCTCGCGAT TGATGGAGCA CGAAGGCATC
TACTACCACT TCGCGCATGC CATGGGAGAA CACACCCTGG TGCTGTGCGA CGACATCATT
GCCTCGCACA GCGTATTGCC CGGGGGCGCC TCCATTCCCT TTTATCCCCC GGAAAAAGCC
GCCGCAGGCG ATCAGGAAAA CATCCACGCC TGGCAGCTGG AGCAGGAAAT CAAATCGGGC
CGCCATTACA GCGACGACTA CGACTTCAAG AAACCCCGGG CCGACCTCAC CCACCTGCGG
CGCGACCCGC CGGGCCACGC CCATGACGGC CACGAAATCT ACGAATGGCC GGGCGGCTAC
ACCCAGCTGA GCGACGGCGA GGACTACATC CGCGTGCGCC TGAAGGAAAG CCTCACGGGC
CAAAGCCGGG TGCGGGGCCA GTCCTGCCAC CGGGCGCTGG CCACGGGCTA CACCTTCAGC
CTCTACAACT ATCCGCGCGG CGACCAGAAC CAGCAGTACC TGATCACGGG CCTGAGCTAC
CACTTGAAGG AGAATCCCCG CGTCAGTGCC GTGGCCCCGG GCGCCAAGGG CAGCGCCGCG
GAAGACGGCT CCTTCCAGCG CTACGAGTTG CAGGCCCAGC CCACGAGTCT TGCCTACACC
CCTGCGCGCA CCACGCCCAA GCCGCGTACC ACCGGCCCGC AGACCGCCGT CGTCGTGGGC
CCGGCCGGAG AAGAAATCTG GACCGACGAA TACGGCCGCA TCAAGGTGCA ATTCCACTGG
GACCGCCTGG GCGCCATGAA CGAGAACTCC AGCTGCTGGA TCCGCGTGGC CACGAACTGG
GCAGGCCCGG GGTTCGGGGC CATCTCCATT CCCCGCATAG GGCATGAAGT CGTCGTCGAC
TTCCTCAATG GCGACCCGGA CTACCCGCTG GTCACGGGCT GTGTCTACAA CGCGGCCAAC
ATGCCGCCCT GGGCGCTGCC GGCCAACGCC ACGCAATCGG GCATCAAGAC CAGATCGAGC
AAGGGCGGCG CACCGGGCGC CGGCATGAAG AACGGCCAGG GCGACGCCAA CGCTATCCGC
TTCGAGGACA AGGCGGGCGC AGAGCAGCTG TGGCTGCATG CCCAGAAGGA CCAGCTCACC
GAGGTCGAGA ACGACGAGGA CAAATGGGTG GGCAACGACA GGCGCAAGAC CATCGACCGG
GACGAGACCA GCGTCATCCA CCGGGACCGC ACGGAGACGG TGGACCGCAA CGAGACCATC
ACCGTGCACA ACAACCGCAC GGAGCGCGTG GACCACGACG AGAAGATCAG CATCGGCGAC
AACCGCAACG AAGACGTTGG CATCGACGAG AACATCTCCA TCGGCAAGAA CCGCAGCAAG
ACCATCGGCA AGACCGAGAC CGACAAGATA GGCCAGAACT GGCACGTCAC GGTGGGCCTG
CTCAAGACCC AGACCATAGG CATGGCCTAC ATGCAGAACG TGGGTGTGAT GAAGATGATG
AACATCGGCG TCAACTACAT GGAAAACATC GGCGTGGCCA TGCAGACCAC GGTCGGCATG
AGCCAGAACC TCACCGTGGG GCAGGAGCGC CAGGTCAAGG TCGGCAGCAA GCAAAGCACG
GAAGTGGGCT CGCAGTACTC GCTGACCGTG GGCGGTGGTG GTGGCGCGGG AGGCGGAGGC
GGAGCCGGTG GCGGCATGGC CATGAACATC ACGTCGCCCG GTGGCGGTGG CGGTGGCGGT
GGCGGTGGTG GTGGTGGTGG TGGCGGCGGC AGCGGTGGGG GCGGTGGAGG CGGAGGTGGC
AAGGCCTCCC AGCTCACCAT GGATGGGCAA AGCATTGAGC TCAACGCCGC CAAGATCCGG
CTCGAAGCCC AGCAGGAAAT CCTGCTGACC TGCGGCGAAA GCACCATCCG CATCACGCCC
GGCGACATCC AGATTCTCTC GCCCACGGAC CGGCTCAACT GCTGA
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| Protein sequence | MTRRVTIHTP LGEQLHFREL RGQENISQLF SLDVEMLSES ESIDPKALLG KNATIEIETQ
GGGRRFIDGI VTRFGMQGQD HRHYAYKARL SPWLWLATRK SDFRIFQNQT VPDIIEQVLG
VYGHPLQRKL TRAYRSWDYC VQYNESDCDF VSRLMEHEGI YYHFAHAMGE HTLVLCDDII
ASHSVLPGGA SIPFYPPEKA AAGDQENIHA WQLEQEIKSG RHYSDDYDFK KPRADLTHLR
RDPPGHAHDG HEIYEWPGGY TQLSDGEDYI RVRLKESLTG QSRVRGQSCH RALATGYTFS
LYNYPRGDQN QQYLITGLSY HLKENPRVSA VAPGAKGSAA EDGSFQRYEL QAQPTSLAYT
PARTTPKPRT TGPQTAVVVG PAGEEIWTDE YGRIKVQFHW DRLGAMNENS SCWIRVATNW
AGPGFGAISI PRIGHEVVVD FLNGDPDYPL VTGCVYNAAN MPPWALPANA TQSGIKTRSS
KGGAPGAGMK NGQGDANAIR FEDKAGAEQL WLHAQKDQLT EVENDEDKWV GNDRRKTIDR
DETSVIHRDR TETVDRNETI TVHNNRTERV DHDEKISIGD NRNEDVGIDE NISIGKNRSK
TIGKTETDKI GQNWHVTVGL LKTQTIGMAY MQNVGVMKMM NIGVNYMENI GVAMQTTVGM
SQNLTVGQER QVKVGSKQST EVGSQYSLTV GGGGGAGGGG GAGGGMAMNI TSPGGGGGGG
GGGGGGGGGG SGGGGGGGGG KASQLTMDGQ SIELNAAKIR LEAQQEILLT CGESTIRITP
GDIQILSPTD RLNC
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