| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0299 |
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| Symbol | |
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| ID | 5745835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 333949 |
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| End bp | 338526 |
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| Gene Length | 4578 bp |
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| Protein Length | 1525 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641295361 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001561330 |
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| Protein GI | 160895748 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGGCA AACCCGCAGC CCGCATCACC GACAGCGTCG TCAAGGGCAA GATCGTCACC
GGCTCGCGCA CCGTGCTCAT CGGCAGCCAG GGGGGCCTGG CCTGCTCCGT CTGCCCAGGT
GGCATCACCG TCGGCTCCCC CGTCAACCCC CAGCTGGGCG CCAAGGTCCT GCTGGGCGCA
CAAGACCTGG ACTTTGCCCT GCCGTCGGCC GCGCTGCCTG TGGCATGGCA GCGCCAGTAC
AGCAGCTACG TCAACCCCGA GCACGGCGCT GCCTGCGGCC TGCTGGGCCA TGGCTGGCAC
CTGCTGCAGG AGCTCAGCAT CCGCCTGCAG GAAGAGGCCA CCTTGCTGCT GGATGCCAGC
GGCCGCGTCA TCACCTTCGA CCAGCCTCTG GTGCCGGGCG GCCAGCTGCA CAGTGCCAGC
GAAGACCTCT GGCTGCTGCG CGGCGGCAGC ATGGAGCCGG ACGGCGGCAC AGCGCCCTGG
GCCGCCAATC CTCGGTGGTC GCATGTGGAA CAGGCACTGG TGCGCAACCC GCAAGCCATC
CTCGCGGTCA GCGGCGATGG CGACACCCTC TGGGGCTTTG GTCCTGCGCC CGGTGAACCT
GTCGACGGTC CCTGGCGGCT CATGGCCCAG ATCGACCGCT TCGGGCGCCG CCAGCTCTAC
CACTACAGCG ACGGCACCAC GCCAGAGGCC GGCCACAGTG CCGGCAAAGA GGCTGTGCCC
GCAGGCCGCC TGGTCTCGCT GAGCGACGGC ACAGGCCGGC GCTACCGGCT GCTGCACCAG
CGCATCCATG GTGGCAAGGA CGCGCAGGGA CTGAACGGAC TGTGGGGCGC CGACGACGGC
TGGCGAGTCA CAGGCGTGGA CCTCACACAG GACCCGTTGC ACCCCCTGTC CACCCCCATT
GCCCTCGTGC GCTACGGCTA CAGCAGCGCA GGCGACCTCA TCACCGTCCA CGACCGCGCA
GGCCAGCTCG TGCGCGAATT CGAATGGGAC CACCACCGCA TCAGCGCCCA CCGCCATGCC
AGCGGACCCT GGCACCGCTA CCGCTACGAG AGCGCCCAGC CCGGCGCCCG CGTCATCGAG
CACAGCAACC AGGAAGGGCT CAGCTACCGC TTCGACTACC TGGCCCAGCC CCCGGGCCCG
GACGGCCAGC CACGCGCCGC CACCCGCGTC AGCGACAGCC TGGATCGCAT CGAGACCTAC
TACTTCGAAG GCGCAGCGGG CCTGTCGCGC CTCATCGCCC ACCACAAGGC CGATGGCAGC
CGCTGGCTGC AGGCCTTCGA CAGCTTCGGC CGGCTGGCCT CGCGCACCGA CCCGCTGGGA
CGCAGCGTGC ACCTCAGGCG TGATGGCCAG GGCCGACTCA TCGGCGTGCA ACTGCCCGAC
GGGCGCAGCA CCCAGCAGGA ACACGATGAA GCCACGGGCC GCCTGCTGCA AAGCACTGAC
ACCGCAGGGG CCACCACCGG CTACGAATAC GACAGCTGGG GCCGCCTCAC CCAGATCACC
CAGGCCGACG GCAGCACCGA GCGCTACCAC TACCCCGATC CCAAAGAAGC GCCGCTCACC
TGCGACAGCC CCCGGCGCAT CGAAGACGCC CAGGGCGGCA GCAAACAGCT GGCCTGGAGC
GACGCGGGCC AACTGCTCAG CTACACCGAC TGCTCGGGCC ACAGCACGCA CTACCACTAC
GACCGCTGGG GAGCGCTCAT CGAAGTGGAC AACGCCCTGG GCCAGCGCCA ACGCCACCAG
CGCGACGGCC AGGGGCGCAT CGTGGCCAGC GAACTGCCCA ACGGCCAGAT CGAGCGCTAC
CACTACGACA GCGCAGGCCA CCTCACGCGC ATCGAGCCAG CCCAGCCTGC GGGCACCTCC
AGCGAAACCC AGACCGCAGA CCCCAGCATC CACCTGCGCT ACGACCTCTG GGGCAGGCTG
GTCCAGCGAA CACATGGCGG CCTCACCCTG GCCTTCGAAT ACGACAGCGC AGGCCGCCTC
CTGCGCCTCG TCAACGAGAA CGGGTCGCAA AGCCGCTTTG CCTGGGACGC GCTGGACCGG
CTCGTGCAGG AAGAAGGGTT TGACCAACGG CTGCAGCGCT ACCGCTGGGA CGCGGCAGGC
CAGCTCCTCG AAGCCACGGA CGGCAACGCC GCACAGCAAA GCAGCAGCCA CTACCGCTGG
GACGAAGGCG GGCGATTGGC CGAACGCCAG CTGCCCGCCA CGCCCCATGC GCCCGCACAA
ACCCACCGCT ACGAATGGGA TGCGGCCGGG CGCCTCACGG CGGCCAGCGT CTGGCAACAC
ACCGGCGAGA ACACCGCAGA GAACACCATC CAACTGCAAA GCCGCATAGC ACTGGAGCGA
GACGCCCTTG GCCGCATCAC CGCAGAAGTG CAACAGCTGT ACCGGCCTGG CAAGGACGGG
GGCGGCAACG GGGGCACAGA GCAGATCGAA TACGAACACC GCATCGCCCA CACCCTGGAC
GCGCTGGGCG CACGCCAGCA CAGCCAGCTG CAAGGCCTGG GGGATATCGC CTGGCTCACC
TACGGCTCAG GCCATGTACA CGGACTGCAG CTCAACGGAG CCAGCCTCAT CGACTTCGAG
CGCGACAACC TGCACCGCGA AGTCCGCCGC AGCCTGCACC CACCCACCCC TGCAGCAGAC
GCACACCACC CCCTGCAGGT GCAACGCCAA TGGGACAGCC TGGGCCGCCT CACGGCCCTG
GGCACCACGG GCCTGCAAGC GCTGCAGCCC ACCGACGCCC AGGCCCACGC CCTCATAGGC
CAGATCCTCG GCCGCCGCTA CCACTACGAC AGCCTGGGCC AGCTCGTTGC CATCGAACAG
GCCGGCGCCC CGGGCCAGGC CGCACAACTG CTGCGCTACG GTTACGACGG CGCCGGGCGC
CTCAGAGCGG CCACCGACAG CCAGGACCCC CAGACCACCA CCCGCTGGCA GATCGACCCC
GCTGGCAACC GCCTGCCAGC ACCCGGTGCA CCCGGCGCAT CGGGCCAGAC GAACACCCAA
GACAACTGGG CCGCTCAGGT CCACGCCCAC TGGCGGCACA CCGACTTCAA CCTCATGGGC
CTGGGCCACC TTGCAGGCCA GCGGCAAGGC CCCGTGCAGC GCTGGGAAGA CAACCGCATC
GGCTTCACCG AAGACCGCGT CTGGCGCTAC GACCCCTGCG GCAACCGCAT CGCGCAAATG
CAGGCAGACC ACAGCCAGCA GCAACTGCAC TACGACGGAG CCCACCAGCT CATAGCGGTG
CGCAGCAGCC AGATCCAGGG CAACGCCGAG CAGTTGCGCC ACCACAGCCG CTACACCTAC
GACGCCCTGG GCAGGCGCCT GAAGCAGCAA GTGGAAAGCG CGGACTCCAC AGAATCCACC
CGCACCCACT ACTACGGCTG GGACGGCGAC CGCCTCATCC ACACCGAACG CCTGCAGGGC
GGCGACGACA CCCGCCACAT AGAACACACC ATCTACGAAC CCGGCAGCTT CACGCCCCTG
GTGCGCCTGA GCACTACGGC CAGCGGCGAC CCCCAAAACG AGCCCCACCT GCTGGTGCAG
GCCATCGCCG CAGGCCTGCC CGACCAGGAC GACCCCAATC ACACGCCGGC CCTGGCCATG
ATGCAAACCA TGCTCAGCGC CATGCCGCGC GACATGCAGC AAGACGCCGC CCGCCATCTG
CGCCACACCC TGGACCACGG CCTGCCGCCC AGCGCCCAAG CCATGCTGGG TGAACAGGCA
GACAGCACTA CACGCCTGCT CAACGGCATG CAGGCCCAAC TGCAGAAACA GGAAAAAGAA
CAGCACGCCC GCATCGCCAT CCACCACTAC CACTGCGACC ACCTGGGGGC ACCCATGGCC
CTGACGGACC AGACCGGCCA GGTGGCCTGG GCCGCAAAGC TGGACCCCTG GGGCAATGTG
CTGCAGGAGT ACAACCCGCA GGGCATCCAC CAGGCGATCC GGCTGCCAGG GCAGCACCAT
GACAGGGAGA CGGGGCTGTA TTACAACCGG CATCGGTATT ACGATCCGGT GGTGGGGAGT
TATATCAATC AGGATCCGAT TGGTTTGATG GGAGGCAATA ATCACTATAT CTACCCTGTA
AATCCCACGG GGTGGATAGA TTCGTTAGGC TTACAGCAAG CCTGCGTTGT TAATTTTCCA
GATTATCCGG TTGAGTACGC CGAAGGTAAA ACAAGCACAT GGCTTGGTGG GCATAGTGGT
GTGTTGACAT ATGATACTTC AGGGAAAACA CAATACTTCG AATACGGTAG ATACAACCCA
AATGCAAAAG GAATTATGGG CTCTAAACTA CCCCAAGACG ACGGAAACGT TCGGCAAACT
CCAATGCCTA ATCTAAAAAT AGGCAAAGAT GGTGTTCCAA CAGATGACTC CATGAGAAAT
CTGGAGGAGC AGCTTTCAAA GAGATCAGGC AAAGGGACAC CGGCAAAGTT AACCTGTAGT
TCTGCCGACC CTAAAAAAGT TGCTGACTAC GCAAAAGAAA TTTCAGAAAA TAAAGATAGA
GAAAAATATA ATTGGAATCC ATTCAATTCC AATCACTGCC GCACTTTTGC AAGAGATGCC
GCCAAAGCAG GGCAATAA
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| Protein sequence | MSGKPAARIT DSVVKGKIVT GSRTVLIGSQ GGLACSVCPG GITVGSPVNP QLGAKVLLGA
QDLDFALPSA ALPVAWQRQY SSYVNPEHGA ACGLLGHGWH LLQELSIRLQ EEATLLLDAS
GRVITFDQPL VPGGQLHSAS EDLWLLRGGS MEPDGGTAPW AANPRWSHVE QALVRNPQAI
LAVSGDGDTL WGFGPAPGEP VDGPWRLMAQ IDRFGRRQLY HYSDGTTPEA GHSAGKEAVP
AGRLVSLSDG TGRRYRLLHQ RIHGGKDAQG LNGLWGADDG WRVTGVDLTQ DPLHPLSTPI
ALVRYGYSSA GDLITVHDRA GQLVREFEWD HHRISAHRHA SGPWHRYRYE SAQPGARVIE
HSNQEGLSYR FDYLAQPPGP DGQPRAATRV SDSLDRIETY YFEGAAGLSR LIAHHKADGS
RWLQAFDSFG RLASRTDPLG RSVHLRRDGQ GRLIGVQLPD GRSTQQEHDE ATGRLLQSTD
TAGATTGYEY DSWGRLTQIT QADGSTERYH YPDPKEAPLT CDSPRRIEDA QGGSKQLAWS
DAGQLLSYTD CSGHSTHYHY DRWGALIEVD NALGQRQRHQ RDGQGRIVAS ELPNGQIERY
HYDSAGHLTR IEPAQPAGTS SETQTADPSI HLRYDLWGRL VQRTHGGLTL AFEYDSAGRL
LRLVNENGSQ SRFAWDALDR LVQEEGFDQR LQRYRWDAAG QLLEATDGNA AQQSSSHYRW
DEGGRLAERQ LPATPHAPAQ THRYEWDAAG RLTAASVWQH TGENTAENTI QLQSRIALER
DALGRITAEV QQLYRPGKDG GGNGGTEQIE YEHRIAHTLD ALGARQHSQL QGLGDIAWLT
YGSGHVHGLQ LNGASLIDFE RDNLHREVRR SLHPPTPAAD AHHPLQVQRQ WDSLGRLTAL
GTTGLQALQP TDAQAHALIG QILGRRYHYD SLGQLVAIEQ AGAPGQAAQL LRYGYDGAGR
LRAATDSQDP QTTTRWQIDP AGNRLPAPGA PGASGQTNTQ DNWAAQVHAH WRHTDFNLMG
LGHLAGQRQG PVQRWEDNRI GFTEDRVWRY DPCGNRIAQM QADHSQQQLH YDGAHQLIAV
RSSQIQGNAE QLRHHSRYTY DALGRRLKQQ VESADSTEST RTHYYGWDGD RLIHTERLQG
GDDTRHIEHT IYEPGSFTPL VRLSTTASGD PQNEPHLLVQ AIAAGLPDQD DPNHTPALAM
MQTMLSAMPR DMQQDAARHL RHTLDHGLPP SAQAMLGEQA DSTTRLLNGM QAQLQKQEKE
QHARIAIHHY HCDHLGAPMA LTDQTGQVAW AAKLDPWGNV LQEYNPQGIH QAIRLPGQHH
DRETGLYYNR HRYYDPVVGS YINQDPIGLM GGNNHYIYPV NPTGWIDSLG LQQACVVNFP
DYPVEYAEGK TSTWLGGHSG VLTYDTSGKT QYFEYGRYNP NAKGIMGSKL PQDDGNVRQT
PMPNLKIGKD GVPTDDSMRN LEEQLSKRSG KGTPAKLTCS SADPKKVADY AKEISENKDR
EKYNWNPFNS NHCRTFARDA AKAGQ
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