| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0278 |
|---|
| Symbol | |
|---|
| ID | 5745814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 309909 |
|---|
| End bp | 311126 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641295340 |
|---|
| Product | cystathionine beta-lyase |
|---|
| Protein accession | YP_001561309 |
|---|
| Protein GI | 160895727 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
|---|
| TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.462008 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCCG AACACGCCCC CTTGCCTGGC TCATCGGCCC CTGGCGCCCC CGCGCTGGAC
CTGCAGACCC GGCTGCTGCA TGCGGGCAAG CGCCCGGCCT ATGCGGGCGG CACGGCCGTC
AACCCGCCCC TGGTGCGCGC CAGCACCGTG CTGTTCGAGA GCACGGCACA GCAGCGCGAG
ATGCGCGAGC GCCGCGCCGG CGAGCGCATC TTCAGCTACG GTGCGCGCGG CACGCCCACC
GGCTTTGCGC TGGAAGACGC CGTCAGCGAG CTGGAAGGCG CCCACCGCAC GCGGCTGCTG
CCCACCGGCC TGGCGGCCAT CGGCATGGCC CTGCTCAGCT ACCTGCGCCC CGGCGACCAT
GTGCTGCTGA CCGACAGCGC CTACCAGCCT GTGCGCCACC TGGCCGGGCA ATGGCTGCGG
CCCTACGGCA TCGAGTACGA CTTCTTCGCG GCCGATGGCA GCGACGCCCA GGCGCGCATG
CGCCCCAACA CCCGCATGGT CTATGCCGAA TGCCCGGGCT CCCTGGTCTA CGAGATGTGC
GACCTGCCCG CGCTGGCGGC CATGGCCCAT GCGCGCGGCG CCCTGGTCGT GGCCGACAAC
ACCTGGGGGT CGGGCTGCCA GTACCGGCCG CTGGCGCTGG GGGCCGATGT CTCGGTGATG
GCAGCCACCA AGTACCTGTC GGGCCACTCC GACGTGATGA TGGGCACCGT GGCCACCACC
GAGGCCGCCT GGGAGCCGCT GGCGGCGCGC TGCGATGCCT TCGGCATGGC GGTCAGCCCC
GACGATGCCT GGCTGGTGCT GCGCGGCATG CGCTCGCTGG CCGCACGGTT GCAGATGCAC
GAGGCGCATG CGCTGGAGGT GGCGCACTGG CTGCAGCAGC ACCCGGCCGT GGCCACCGTG
TTCTGCCCCG CGCTGCCCAC GCATCCCGGC CATGCGCTGT GGCTGCGCGA CTGCCAGGGC
ACGAACGGCC TGGTGTCGCT GGAGCTGCAG CCCGGCACCG CCGAGGCCGC CGTGGACCGC
TTCATCGACG GCCTGCGCCT CTTCGGCATC GGCGCCTCCT GGGGCGGCTA CGAAAGCCTG
GCGACGGCCG CGCACATGGC GCATGCGCGC AGCGTCACCG ACTGGAGTGC GCGCGGGCCC
GTGGTGCGCC TGCACATCGG CCTGGAGTCG CCGCGCGACC TCATCGCCGA CCTGGAGCAG
GGGCTGGCGG CACTTTAG
|
|---|
| Protein sequence | MAAEHAPLPG SSAPGAPALD LQTRLLHAGK RPAYAGGTAV NPPLVRASTV LFESTAQQRE
MRERRAGERI FSYGARGTPT GFALEDAVSE LEGAHRTRLL PTGLAAIGMA LLSYLRPGDH
VLLTDSAYQP VRHLAGQWLR PYGIEYDFFA ADGSDAQARM RPNTRMVYAE CPGSLVYEMC
DLPALAAMAH ARGALVVADN TWGSGCQYRP LALGADVSVM AATKYLSGHS DVMMGTVATT
EAAWEPLAAR CDAFGMAVSP DDAWLVLRGM RSLAARLQMH EAHALEVAHW LQQHPAVATV
FCPALPTHPG HALWLRDCQG TNGLVSLELQ PGTAEAAVDR FIDGLRLFGI GASWGGYESL
ATAAHMAHAR SVTDWSARGP VVRLHIGLES PRDLIADLEQ GLAAL
|
|---|
| |