Gene Daci_0229 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_0229 
Symbol 
ID5745765 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp258649 
End bp259377 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content69% 
IMG OID641295291 
Productpolar amino acid ABC transporter, inner membrane subunit 
Protein accessionYP_001561260 
Protein GI160895678 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0765] ABC-type amino acid transport system, permease component 
TIGRFAM ID[TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTATC AATTCGACTT CGGCGCCGTG TTCGACTACA GCGGCCTGCT GGCACAGGGC 
GCAGGCTTCA CGCTGGCGCT GACGGCGGCG GGCGCCGTGC TGGGCGGCGC CATCGGCGTG
GCCGGCGGCG TCAGCCGCGC CTGGCGCATT GCGCCGCTGC ACTGGCTGTT CAAGGTGTAC
GTGGAGGGCA TACGCAACAC GCCCTTCCTG GTGCAGCTGA TGTTCGTGTT CTTCGGCCTG
CCTTCGCTGG GCGTGCAGAT CAACGAATGG CAGGCCTGCC TGCTGACCAC GGTGATCAAC
CTGGGCGCCT ACATCACAGA GATCGTGCGC GCCGGCATCC AGGAGACGCA GCGCGGCCAG
CTGGAAGCCG CTGGCGCGCT GGGCATGGGC CGCTGGGCGC TCTTCCGCCA TGTGGTGCTG
CGCCCTGCGC TGCAGCGGGT CTGGCCCTCG CTGAGCAGCC AGATCGTGAT CGTGATGCTG
GGCACCTCGG TGGTCTCGCA GATCGCCGCC CAGGACCTGA CGTTTGCGGC CAACTTCATC
CAGTCGCGCA ACTTCCGCGC GTTCGAGACC TACCTGGTGG TGACGGCGGC GTACTTCGTG
TTGGCCCTGG CACTGCGCCA GTTGCTGGCC TGGATAGGCC AGCGCTTCGT GGTGGGCCGC
CGCACGCCAC GTGCAGCCCG GCCCGCTGCA CCCGCTGCAC CTGCGACCAC TGCCGGAGAC
GCCGCATGA
 
Protein sequence
MAYQFDFGAV FDYSGLLAQG AGFTLALTAA GAVLGGAIGV AGGVSRAWRI APLHWLFKVY 
VEGIRNTPFL VQLMFVFFGL PSLGVQINEW QACLLTTVIN LGAYITEIVR AGIQETQRGQ
LEAAGALGMG RWALFRHVVL RPALQRVWPS LSSQIVIVML GTSVVSQIAA QDLTFAANFI
QSRNFRAFET YLVVTAAYFV LALALRQLLA WIGQRFVVGR RTPRAARPAA PAAPATTAGD
AA