Gene Daci_0224 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_0224 
Symbol 
ID5745760 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp254834 
End bp255523 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content64% 
IMG OID641295286 
Producturea ABC transporter, ATP-binding protein UrtE 
Protein accessionYP_001561255 
Protein GI160895673 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0410] ABC-type branched-chain amino acid transport systems, ATPase component 
TIGRFAM ID[TIGR03410] urea ABC transporter, ATP-binding protein UrtE 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCAAG TCAAGGATCT GTACGTGGCC TATGGCCAGA GCGAGGCGCT GCACGGCATC 
AGCTTCGAGG GCCGCGAGAA CGAAACCGTG GCCATCATGG GCCGCAACGG CATGGGCAAG
ACCACGCTGT TCAAAAGCCT GATGGGCGTC ATGCCCGCCA AGAGCGGCCA GATCACCGTG
GCCGGCCAGG ACGTCACGAA GGACGAGAGC TTCCGGCGCG TGGCCAAGGG CATTGCCTAC
GTGCCCCAGG GCCGCATGAT CTTCCCCACG CTGACCGTGG AAGAGAACAT ACAGACGGGC
CTGGAGAACG CGAAGACGCG CCAGGTGCCC GACGACATCT ACGCCCTGTT CCCCGTGCTC
TGGGACATGC GCCGGCGCAA GGGCGGCAAC CTTTCGGGCG GGCAGCAGCA GCAGCTGGCC
ATTGCGCGCG CCCTGGTCAC CGACCCCAAG GTGCTGCTGC TGGACGAGCC CACCGAGGGC
ATCCAGCCTT CCATCATCAA GGACATCGCC AAGGCGCTCA ACGAGATCCG CAAGCTGCGC
CGCATCACCA TCGTGGTCAG CGAGCAGGTG CTTTCCTTCG CCATGGATGT GGCCGACCGG
CTGTTCGTCA TCGAGGGCGG GAGATTGGTA CATGAAACCG CGCGTGCCGA TACCGACGAG
CAGCGCATCA AGTCCTACCT CTCCGTCTGA
 
Protein sequence
MLQVKDLYVA YGQSEALHGI SFEGRENETV AIMGRNGMGK TTLFKSLMGV MPAKSGQITV 
AGQDVTKDES FRRVAKGIAY VPQGRMIFPT LTVEENIQTG LENAKTRQVP DDIYALFPVL
WDMRRRKGGN LSGGQQQQLA IARALVTDPK VLLLDEPTEG IQPSIIKDIA KALNEIRKLR
RITIVVSEQV LSFAMDVADR LFVIEGGRLV HETARADTDE QRIKSYLSV