| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0163 |
|---|
| Symbol | |
|---|
| ID | 5745699 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 182181 |
|---|
| End bp | 183395 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641295225 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001561194 |
|---|
| Protein GI | 160895612 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTTC TTCCACCGCC GCCGTTGCGG CGTGCCCTGT TCGGAGGCGC CCTGGCGGCG
CTGGCCCTGC TTGCCGGCTG CCGACCGCAG GCCGTGGGCG ATGCCCACGC CAGCGACGGC
CCGCCGCCTG CGCCCGAGGT GCTGGTGAGC GAGGTCGTGC CGGCCAGCGT GCGTGTCTGG
GACGAGTTCA ACGGCCGCAT CGATGCCGTG GAGTCCGTGC AGCTGCGCCC GCGCGTGTCG
GGCTATATCG AGCGCATTGC CTTCAGCGAG GGGCAGGAGG TCAGGAAGGG CCAGCTGCTG
TTCGTGATCG ACCAGCGGCC CTATCGCGCC GCCCTGGCCA GCGCCGAGGC CGAGCTGGAG
CGCACGCGCG CAGGCGCCGC GCTGGCCCGC ACCCAGGACC AGCGTGCCCG CCAGCTGGTG
GCCGAGCATG CCGTCTCGCG CGAGGAGGCC GATACGCGTG CCGGCGCCCT GGCCCAGAGC
GCCGCCCAGG TGCGTGCTGC CGAGGCCGCG CTGGCGGCAG CCCGGCTCAA CCTGGATTTC
ACCGAGGTGC GCGCGCCGGT CTCCGGCCGC GCGGGCCGCG CCCTGCTCAC CGTGGGCAAC
CTGGCCCAGG CCGACCAGAG CGTGCTGACC ACCGTGGTTT CGCAGGACCC GGTGTATGTC
TACTTCGATG CGGACGAGCA CAGCTTCCTG CGGCAGCAGC AGGCCGCCAA GGACACCAAG
GGGCGGCCCG GCGTGCAGCG GCCCGTGCGT GTGGGGCTGG CCGGCGACGA AGGCTTTCCG
CATGCGGGCA GCCTGGACTT CACCGACAAC CAGCTCAACG CGGGCACGGG CACGGTGCGC
ATGCGCGCCC GCCTGCCCAA TCCCGACCGC CTGCTGACGC CGGGCCTGTT CGCGCGCGTG
CAACTGCAAG ACGCGCAGGG CGCGGGCGGC GAGCGGCAGA CACTGCTGAT CGACGACAAG
GCCGTGCTCA CCGACCAGGA CCGCAAGTAC GTCTATGTGG TGGGCGAGGG CAACAAGGCC
GAGCGCCGCG ACCTGGAGCT GGGCCGCATG GTCGATGGCC GGCGCGTGGT GGACAAGGGG
CTGGCGGCGG GCGACAGCCT GGTGGTCGGC GGCCTGCAGC GCATCTACTA CCCCGGCATG
CCGATCAGCC CCAAGCCTGC GCCCGGCGAT GGGCAGGCGG CGGTGGCCAA GGCGCCGGCC
GTGGCCGCGC AGTGA
|
|---|
| Protein sequence | MPVLPPPPLR RALFGGALAA LALLAGCRPQ AVGDAHASDG PPPAPEVLVS EVVPASVRVW
DEFNGRIDAV ESVQLRPRVS GYIERIAFSE GQEVRKGQLL FVIDQRPYRA ALASAEAELE
RTRAGAALAR TQDQRARQLV AEHAVSREEA DTRAGALAQS AAQVRAAEAA LAAARLNLDF
TEVRAPVSGR AGRALLTVGN LAQADQSVLT TVVSQDPVYV YFDADEHSFL RQQQAAKDTK
GRPGVQRPVR VGLAGDEGFP HAGSLDFTDN QLNAGTGTVR MRARLPNPDR LLTPGLFARV
QLQDAQGAGG ERQTLLIDDK AVLTDQDRKY VYVVGEGNKA ERRDLELGRM VDGRRVVDKG
LAAGDSLVVG GLQRIYYPGM PISPKPAPGD GQAAVAKAPA VAAQ
|
|---|
| |