| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_0103 |
|---|
| Symbol | |
|---|
| ID | 5745639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 110161 |
|---|
| End bp | 110979 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641295165 |
|---|
| Product | extradiol ring-cleavage dioxygenase class III protein subunit B |
|---|
| Protein accession | YP_001561134 |
|---|
| Protein GI | 160895552 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3384] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTGG TATTTGCAGG CGTTTGCAGC CACGCGCCCG GCATCACGGG CCGCGCACAC
CTGGCCGATC CGGCCACCAG GGATGCCTTC CATGCCGCCT TCCGCGACAT GGGCGCACGG
CTGGAGGCGG CGCGGCCCGA TGCCGTGATC GTCATCGCGG CCGAGCACTT CGCCAACTTC
TTCATGAACA ACATGCCGGC CTATGCCATC GGCATGGCCG ACCACTACGA AGGACCCATC
GAGGACCCGG CCTGGCTGGG CATAGAGCGC CACCGCATCC CCGGCAATGC CGAGCTGTCG
CGGCGCCTGA TCACCGAGGT CATGCAGACC GTGGACGTGG CCTTTGCCGA GGAGTGGAAG
TTCGACCACG GCATCATGGT CCCGCTGCAC TTTCTGACGC CGGCCTATGA CAAGGACATC
ATCCCCGTCA ACATCAACTG CCAGGGCCCG CCGCTGACGC CGCTGCACCG CGCCTGGGCC
TTTGGCGAGG CCCTGCGCCG CGCCTGCGAC AAGGCGCCCG AGCGCATCGC CATCGTGGGC
ACGGGCGGCA TCTCGCACTG GCCGGCCACG CCCGACTCGG GCAAGGTCAA CTGGGAATGG
GACCAGCAGT TCATGGACCG CTGGTGCCGC AACGACCGGG ACGCGCTGCT GTCGTACACC
GACGCCGAGA CCTACCGCGA CGGCGGCCAG GGCGGCTTCG AGATCCGCAG CTTCATCGCC
GTGGCCGCCG CCGCGCGCGG CGCGGGCCAG GTGCTGTACT GCCAGCCCAT TCCCATCTTC
GCCGTGAGCT GCACGGCCGC CACCATGGAG GTGGCCTGA
|
|---|
| Protein sequence | MSLVFAGVCS HAPGITGRAH LADPATRDAF HAAFRDMGAR LEAARPDAVI VIAAEHFANF
FMNNMPAYAI GMADHYEGPI EDPAWLGIER HRIPGNAELS RRLITEVMQT VDVAFAEEWK
FDHGIMVPLH FLTPAYDKDI IPVNINCQGP PLTPLHRAWA FGEALRRACD KAPERIAIVG
TGGISHWPAT PDSGKVNWEW DQQFMDRWCR NDRDALLSYT DAETYRDGGQ GGFEIRSFIA
VAAAARGAGQ VLYCQPIPIF AVSCTAATME VA
|
|---|
| |