Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_0029 |
Symbol | |
ID | 5745565 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 36178 |
End bp | 37359 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641295092 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_001561061 |
Protein GI | 160895479 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCAAC ACCCGACCTC CTCGCGCCGC CGCAGCCTGC TGCTGGCGGC CGGCGCCAGC CTGGCCGCAC CGCTGGCCGC CCGCGCCCAG GCTGGCGGCG AAGACATCGT GATCGGCGGC TCCATCCCCA TGACGGGCGT GTTCGCCTTC GCGGGCGTGG GCATCAATGC CGGCATGGGC GACTACGTGA AGATGGTCAA CGAGGCCGGC GGCATCAAGG GCCGCAAGAT CCGCTACGTG CCCGAGGACA CGGGCTACAA GGTCGATGTC TCCGTGGCCG CGTTCAAGAA AATCACCAGC CAGAACAAGG TCAACCTCTA CTACGGCGAC TCCACGGGCT TTTCCAAGAC CATCAACCCC GAGCTGGACC GCAACGGCGC CATCCTCATG GCGGGCGCCT CCTTCGCCAC CGAGCTCAAC AACCCGGCCA AGTACCCGAA CCAGTTCCTC GTGGGGCCCG ACTACACGGA GATGTTCGGC ATCCTGCTCA AGCACATCGC CAAGGAAAAG CCGGGCGCCA AGGTGGCCTT CGTCTACTCC GACTCCGAAT TCGGCCGCGA CCCCATCGAG GCCAGCGAGG CGGCCGCCAA GAAGCTGGGC CTGAACGTGG TGGCCAAGCT GATGACACCG CCCGGCAGCG TGGACGTGTC CACCGAAGTC ATCAAGCTGC GCCGCGCCGC GCCCGACTAC ACCATCTTCC ACGGCTACAT CCTCGCGCCC ATTCCCGAGT TCATCCAGCA GGGCAAGCAG ATGGGCATGA CCAGCCAATG GATGGGCACC TTCTGGACCA TGGACAGCTC CACCGTCATG AAGATGGGCG AGGCCGGCGA CGGCTTCATG GGCGTCATGC CCTACCGCTA CTACTACGAC ACCTCGGCCA AGGCGCCCAT GCTGGACAAG ATCCGCGCGC TGCGCCCCGA GTACCAGAGC ACGGCCTATA TCCAGGGCTT TCTGGCGGCC ATGCTGTTCG TGGAATCGGC CAGGCGCTGC CTGGACGCGG GCAAGCCGCT CACCGGCCCC AACCTCAAGG CCGCGCTCAA TTCCATCAAG GACTTCGACA CGGGCGGACT GATCGGCGTG CCCATCACCA TCAAGGGCAA TTCGATTCCC GTGGGCCGCG TCTACAAGGC GGACATGAAG GCGCAGAAGA TGCTGCCCGC CTCTGACTGG ATCGCACTTT GA
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Protein sequence | MQQHPTSSRR RSLLLAAGAS LAAPLAARAQ AGGEDIVIGG SIPMTGVFAF AGVGINAGMG DYVKMVNEAG GIKGRKIRYV PEDTGYKVDV SVAAFKKITS QNKVNLYYGD STGFSKTINP ELDRNGAILM AGASFATELN NPAKYPNQFL VGPDYTEMFG ILLKHIAKEK PGAKVAFVYS DSEFGRDPIE ASEAAAKKLG LNVVAKLMTP PGSVDVSTEV IKLRRAAPDY TIFHGYILAP IPEFIQQGKQ MGMTSQWMGT FWTMDSSTVM KMGEAGDGFM GVMPYRYYYD TSAKAPMLDK IRALRPEYQS TAYIQGFLAA MLFVESARRC LDAGKPLTGP NLKAALNSIK DFDTGGLIGV PITIKGNSIP VGRVYKADMK AQKMLPASDW IAL
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