Gene Daci_0029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_0029 
Symbol 
ID5745565 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp36178 
End bp37359 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content65% 
IMG OID641295092 
Productextracellular ligand-binding receptor 
Protein accessionYP_001561061 
Protein GI160895479 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCAAC ACCCGACCTC CTCGCGCCGC CGCAGCCTGC TGCTGGCGGC CGGCGCCAGC 
CTGGCCGCAC CGCTGGCCGC CCGCGCCCAG GCTGGCGGCG AAGACATCGT GATCGGCGGC
TCCATCCCCA TGACGGGCGT GTTCGCCTTC GCGGGCGTGG GCATCAATGC CGGCATGGGC
GACTACGTGA AGATGGTCAA CGAGGCCGGC GGCATCAAGG GCCGCAAGAT CCGCTACGTG
CCCGAGGACA CGGGCTACAA GGTCGATGTC TCCGTGGCCG CGTTCAAGAA AATCACCAGC
CAGAACAAGG TCAACCTCTA CTACGGCGAC TCCACGGGCT TTTCCAAGAC CATCAACCCC
GAGCTGGACC GCAACGGCGC CATCCTCATG GCGGGCGCCT CCTTCGCCAC CGAGCTCAAC
AACCCGGCCA AGTACCCGAA CCAGTTCCTC GTGGGGCCCG ACTACACGGA GATGTTCGGC
ATCCTGCTCA AGCACATCGC CAAGGAAAAG CCGGGCGCCA AGGTGGCCTT CGTCTACTCC
GACTCCGAAT TCGGCCGCGA CCCCATCGAG GCCAGCGAGG CGGCCGCCAA GAAGCTGGGC
CTGAACGTGG TGGCCAAGCT GATGACACCG CCCGGCAGCG TGGACGTGTC CACCGAAGTC
ATCAAGCTGC GCCGCGCCGC GCCCGACTAC ACCATCTTCC ACGGCTACAT CCTCGCGCCC
ATTCCCGAGT TCATCCAGCA GGGCAAGCAG ATGGGCATGA CCAGCCAATG GATGGGCACC
TTCTGGACCA TGGACAGCTC CACCGTCATG AAGATGGGCG AGGCCGGCGA CGGCTTCATG
GGCGTCATGC CCTACCGCTA CTACTACGAC ACCTCGGCCA AGGCGCCCAT GCTGGACAAG
ATCCGCGCGC TGCGCCCCGA GTACCAGAGC ACGGCCTATA TCCAGGGCTT TCTGGCGGCC
ATGCTGTTCG TGGAATCGGC CAGGCGCTGC CTGGACGCGG GCAAGCCGCT CACCGGCCCC
AACCTCAAGG CCGCGCTCAA TTCCATCAAG GACTTCGACA CGGGCGGACT GATCGGCGTG
CCCATCACCA TCAAGGGCAA TTCGATTCCC GTGGGCCGCG TCTACAAGGC GGACATGAAG
GCGCAGAAGA TGCTGCCCGC CTCTGACTGG ATCGCACTTT GA
 
Protein sequence
MQQHPTSSRR RSLLLAAGAS LAAPLAARAQ AGGEDIVIGG SIPMTGVFAF AGVGINAGMG 
DYVKMVNEAG GIKGRKIRYV PEDTGYKVDV SVAAFKKITS QNKVNLYYGD STGFSKTINP
ELDRNGAILM AGASFATELN NPAKYPNQFL VGPDYTEMFG ILLKHIAKEK PGAKVAFVYS
DSEFGRDPIE ASEAAAKKLG LNVVAKLMTP PGSVDVSTEV IKLRRAAPDY TIFHGYILAP
IPEFIQQGKQ MGMTSQWMGT FWTMDSSTVM KMGEAGDGFM GVMPYRYYYD TSAKAPMLDK
IRALRPEYQS TAYIQGFLAA MLFVESARRC LDAGKPLTGP NLKAALNSIK DFDTGGLIGV
PITIKGNSIP VGRVYKADMK AQKMLPASDW IAL