Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_0002 |
Symbol | |
ID | 5745538 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 1544 |
End bp | 2662 |
Gene Length | 1119 bp |
Protein Length | 372 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641295065 |
Product | DNA polymerase III, beta subunit |
Protein accession | YP_001561034 |
Protein GI | 160895452 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00413752 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGTCC TGAAAGCCAC ACAAGACAAA GTTCTCGCGG TCCTGCAATC GGTGTCCGGC ATCGTCGAAC GCCGCCACAC GTTGCCCATC CTGGCCAACG TGCTGATCAA GAAGACCGGC AACGCATTGC AGCTGACCAC CAGCGACCTG GAAATCCAGA TCCGCACCAC CGCCGAGCTC GGCGGCGACA CCGGCGACTT CACCACCACC GTGGGCGCGC GCAAGCTGAT CGACATCCTC AAGACCATGC CCGGCGACCA GACCGTGAGC CTGGAGACCC AGCAGGCCAA GATGGTGCTC AAGGGCGGCA AGAGCCGCTT CACGCTGCAG ACCCTGCCGG CCGAGGACTT CCCGCTGGTT CAGGAGGCTG CGGCCTTCGG CCCTTCGTTC AGCGTGCCGC AGAAGGTGCT CAAGGACCTG CTGGGCCAGG TCTCCTTCGC CATGGCCGTG CAGGACATCC GCTACTACCT CAACGGCATC CTGTTCGTGG CCGAGGGCAA GCAGCTGTCC CTGGTGGCCA CCGACGGCCA CCGCCTGGCG TTCGCAAGCA GCCAGCTGGA CGTGGAAGTG CCCAAGCAGG AAGTGATCCT GCCGCGCAAG ACCGTGCTGG AGCTGCAGCG CCTGCTGTCG GATGCCGGTG GCGAGAACCA GCCCCACATC GAGATGCAGT TCGCCAACAA CCAGGCCAAG TTCACCTTCG GCGGCATGGA GTTCGTGACC AAGCTGGTCG AGGGCAAGTT CCCCGACTAC AACCGTGTCA TCCCGCGCAA CCATACCAAC AGCGTGACCC TGGGCCGCGC CCCGCTGCTG GCAAGCCTGC AGCGCACGGC CATCATGACC AGCGACAAGT TCAAGGGCGT GCGCCTGACG GTGGAGCCCG GCACCTTGCG CGTGGCGTCC AACAACGCCG AGCAGGAAGA GGCCATGGAC GAGCTGGACA TCGACTACGG TGGCGACACC ATCGAGATCG GCTTCAACGT CACCTACCTG ATCGACGCCC TGTCCAACAT GAGCCAGGAC ATGATCAGGA TCGACCTGCA GGACGGCAAC AGCTCGGCCC TGCTGACCAT CCCCGAGAAC GACAGCTTCA AGTACGTCGT GATGCCCATG CGCATCTGA
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Protein sequence | MIVLKATQDK VLAVLQSVSG IVERRHTLPI LANVLIKKTG NALQLTTSDL EIQIRTTAEL GGDTGDFTTT VGARKLIDIL KTMPGDQTVS LETQQAKMVL KGGKSRFTLQ TLPAEDFPLV QEAAAFGPSF SVPQKVLKDL LGQVSFAMAV QDIRYYLNGI LFVAEGKQLS LVATDGHRLA FASSQLDVEV PKQEVILPRK TVLELQRLLS DAGGENQPHI EMQFANNQAK FTFGGMEFVT KLVEGKFPDY NRVIPRNHTN SVTLGRAPLL ASLQRTAIMT SDKFKGVRLT VEPGTLRVAS NNAEQEEAMD ELDIDYGGDT IEIGFNVTYL IDALSNMSQD MIRIDLQDGN SSALLTIPEN DSFKYVVMPM RI
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