| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3941 |
|---|
| Symbol | |
|---|
| ID | 5744692 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 4841935 |
|---|
| End bp | 4843311 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 641295058 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_001561027 |
|---|
| Protein GI | 160882059 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAG ATACCATTGC CGCCATAGCA ACAGGACTGA GTAATGCGGG AATTAGTATA
GTTAGAATAA GTGGAGATCA GGCCTTTGCT GTGATTGATA AGATATTTCA AACAAAATCA
AAGGCAAAAC GATTATCTGA GATGGATTCT CATACGGTAC ACTATGGTTA TATCGTTGAT
GAGGAGGAAA TCATTGATGA AGTTATGGTG ATAATCATGC GTGCTCCAAG AAGTTATACC
ATGGAAGATA GTATAGAAAT TGATTGCCAT GGTGGAATTA CGGTAACAAA AAAAGTATTA
GAAGCAGTAT TAAAAGCGGG TGCAAGAATT GCAGAACCAG GTGAGTTTAC AAAACGTGCA
TTTTTAAATG GCAGAATAGA CTTATCTCAG GCGGAAGCAG TAATTGATGT TATACATGCG
AATAATGAAT TGGCCTTAAA AAACTCTATG AAGCAATTAA AGGGTAATGT ACTTCATAAG
GTAAAAGACG TAAGGCATAG CATAATTTTA GATACAGCTT ATATTGAAGC TGCACTTGAT
GATCCAGAGC ATATTAGTTT AGAAGGGTTC TCTGATAAAT TAAGAGATAA TGTAATTGGA
AGCATCAAAG AACTTTCTGA GCTTATCAAT ACGTCAGAAA ATGGTCGTAT GATTAAGGAA
GGAATTCGTA CAGTTATATT AGGTAGGCCA AACGCTGGTA AATCTTCTTT ATTGAACTTA
ATGGTTGGAG AAGAAAGAGC TATTGTAACA GAGATTGCAG GGACAACAAG AGATACGATT
GAAGAGACAG TATTTTTAAA TGGATTATGT TTAAATCTTA TAGATACTGC TGGAATAAGA
GAAACCTCGG ATTTGGTTGA AAAATTAGGT GTTGAAAAAA GTTTAAAGAG CGCTAAGGAA
GCAGACTTAA TCATCTGTGT TATTGATGCA TCCACACCAT TAAACCAAGA TGATAAAGAA
ATTCTAGAAT TTATCAAAGA TAGAAAAGCA ATCGTACTTT TAAATAAATC AGACTTAGAT
TCTGTAATTG AAGAAGAAAA AATAAATCTT CTTACGAACA AACCTATATT AAAAATTTCT
GCGATTGATC AAACAGGTAT TAAAGATTTA GAACAGACAA TTACAGAGAT GTTTTTTGAA
GGTAACATTT CTTTTAATGA TGAAATATAC ATCACAAATA TGAGACACAA GAATGCACTT
GTAGAAGCAA AGGTTAGTTT AGAGCAAGTA ATTGTTAGTA TAGAAAACGA GATGCCAGAA
GATTTCTTCT CTATAGACTT GATGAATGCA TATGAAATAT TAGGAACAAT CATTGGCGAG
TCTGTGGATG AGGATTTGGT AAATACCATA TTTAAAGAAT TTTGTATGGG TAAGTAG
|
|---|
| Protein sequence | MKTDTIAAIA TGLSNAGISI VRISGDQAFA VIDKIFQTKS KAKRLSEMDS HTVHYGYIVD
EEEIIDEVMV IIMRAPRSYT MEDSIEIDCH GGITVTKKVL EAVLKAGARI AEPGEFTKRA
FLNGRIDLSQ AEAVIDVIHA NNELALKNSM KQLKGNVLHK VKDVRHSIIL DTAYIEAALD
DPEHISLEGF SDKLRDNVIG SIKELSELIN TSENGRMIKE GIRTVILGRP NAGKSSLLNL
MVGEERAIVT EIAGTTRDTI EETVFLNGLC LNLIDTAGIR ETSDLVEKLG VEKSLKSAKE
ADLIICVIDA STPLNQDDKE ILEFIKDRKA IVLLNKSDLD SVIEEEKINL LTNKPILKIS
AIDQTGIKDL EQTITEMFFE GNISFNDEIY ITNMRHKNAL VEAKVSLEQV IVSIENEMPE
DFFSIDLMNA YEILGTIIGE SVDEDLVNTI FKEFCMGK
|
|---|
| |