Gene Cphy_3940 details

Gene Information

• Locus tag: Cphy_3940
• ID: 5744691
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium phytofermentans ISDg
• Kingdom: Bacteria
• Replicon accession: NC_010001
• Strand: -
• Start bp: 4840022
• End bp: 4841905
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 641295057
• Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
• Protein accession: YP_001561026
• Protein GI: 160882058
• COG category: [D] Cell cycle control, cell division, chromosome partitioning
• COG ID: [COG0445] NAD/FAD-utilizing enzyme apparently involved in cell division
• TIGRFAM ID: [TIGR00136] glucose-inhibited division protein A

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGAATC TATATGAAGC TTATGACGTT GTAGTGGTGG GAGCAGGTCA TGCTGGTTGT 
GAAGCCGCGT TGGCATGTGC ACGTCTAGGT TTTAATACAA TAATGTTAAC CGTCAGTATG 
GATAATATAG CATTAATGCC TTGTAATCCA AACATTGGTG GAACATCCAA AGGTCATCTT 
GTACGTGAAA TAGATGCCTT AGGTGGTGAA ATGGGTAAAA ATATCGATAA AACATATATA 
CAATCTAAGA TGTTAAATCA ATCAAAAGGC CCTGCGGTAC ACTCCTTAAG AGCGCAGGCT 
GATAAGATGG ATTATTGCAG GGAGATGCGT AAGGTAGTCG AAAATACGGA TAACCTAACG 
CTACGTCAAG ATGAGGTAAT CGATATCCTT ACGGAAAATA ATGAGGTAAC AGGAGTTAAG 
GTTTATTCAG GTGGAGTATA TCCATGTAAG GTAGTTATCT TATGTACCGG AGTTTATCTT 
AATGCCAGAT GTATCTATGG TGAAACTAGC CATTATACCG GTCCAAATGG ATTACCATCT 
GCAAATCATT TGACAGAAAG CTTAAAGAAG CTTGGAATTG AAATGTATCG TTTTAAAACA 
GGTACTCCTG CAAGAATAGA TAAAAGAAGT ATTGATTTTA GTAAGATGGA GGAGCAATTC 
GGTGATGAAA AAGTAGTGCC ATTCTCCTTT ATCAATAATC CAGAAGATAT CGAAAAAGAG 
CAAATTTCCT GTTGGTTAAC CTATACCAAT GAAAATACAC ATGATATTAT TCGTGATAAC 
ATTCACCGTT CACCATTATA TTCTGGTAAT ATAAAAGGTA CAGGTCCTAG ATACTGTCCT 
TCTATCGAAG ATAAGGTTGT TAAATTTCCT GATAAAGATC GTCATCAAGT ATTTATAGAG 
CCAGAAGGTA ATTATACGAA TGAAATGTAT ATCTCAGGTA TGTCAAGTAG TTTACCAGAA 
GATGTACAGT TTAAGATGTA TCGATCTGTT TCTGGATTAG AAAATGCTAA AATTGTTAGA 
AATGCCTATG CTATTGAATA TGATTGTATT AATCCAATGC AGTTAAAATC AAGCTTGGAA 
TTTATGTCAA TTAATGGTTT ATTTAGTGGA GGTCAATTTA ATGGTAGCTC TGGCTATGAG 
GAAGCTGCAG CACAAGGATT AATGGCAGGT ATTAATGCAG CTAGAAAATT ATCAGGAAAA 
GAACCAATTG TATTAGATCG TTCTCAGGCG TATATCGGTG TTTTAATCGA TGATTTGGTT 
ACAAAAGAAA CGCATGAACC ATATCGTATG ATGACATCAA GAGCGGAATA TCGTTTGATT 
CTTCGACAAG ATAATGCAGA TCAAAGACTT ACCAGGATTG GACATGAAAT AGGATTAATC 
AGTGAAGATC GTTATGAACA TCTAATTGAT AAAGAAAGAA TGATAAAGGA AGAGATGATG 
CGTTTAGAAA ACAGTTTAAT CGGAGCATCA AAAGAGGTTC AAGAAATCCT AGAAGGTCTT 
GGAACAACAA CATTAAAAAC AGGTACTACT TTAGCTGAAC TTGTTAGAAG GCCAGAATTA 
ACCTATGCCG CGTTAGCTCC TTTAGATAAA AATAGAGAGC CATTACCAGA GGAAGTAATT 
ACTCAAGTTG AAATCAACTT TAAGTATGAT GGGTATATTA AAAGACAGGA ACATCAGGTG 
GAGCAGTTCA AAAAATTAGA AGGTAAAAAG ATTCCGGAAG ATTTGGATTA TTCGGATGTA 
CCTTCTTTAA GAATTGAAGC AAAACAAAAA TTAAATCAAA TTAAACCAAG TTCTGTAGGA 
CAAGCGTCAC GTATTTCGGG TGTATCACCG GCAGATATCT CTGTCTTATT AGTTTACTTG 
GAACAAATAA GAAGAAAAAA GTAA 

 

Protein sequence

MTNLYEAYDV VVVGAGHAGC EAALACARLG FNTIMLTVSM DNIALMPCNP NIGGTSKGHL 
VREIDALGGE MGKNIDKTYI QSKMLNQSKG PAVHSLRAQA DKMDYCREMR KVVENTDNLT 
LRQDEVIDIL TENNEVTGVK VYSGGVYPCK VVILCTGVYL NARCIYGETS HYTGPNGLPS 
ANHLTESLKK LGIEMYRFKT GTPARIDKRS IDFSKMEEQF GDEKVVPFSF INNPEDIEKE 
QISCWLTYTN ENTHDIIRDN IHRSPLYSGN IKGTGPRYCP SIEDKVVKFP DKDRHQVFIE 
PEGNYTNEMY ISGMSSSLPE DVQFKMYRSV SGLENAKIVR NAYAIEYDCI NPMQLKSSLE 
FMSINGLFSG GQFNGSSGYE EAAAQGLMAG INAARKLSGK EPIVLDRSQA YIGVLIDDLV 
TKETHEPYRM MTSRAEYRLI LRQDNADQRL TRIGHEIGLI SEDRYEHLID KERMIKEEMM 
RLENSLIGAS KEVQEILEGL GTTTLKTGTT LAELVRRPEL TYAALAPLDK NREPLPEEVI 
TQVEINFKYD GYIKRQEHQV EQFKKLEGKK IPEDLDYSDV PSLRIEAKQK LNQIKPSSVG 
QASRISGVSP ADISVLLVYL EQIRRKK