Gene Cphy_3885 details

Gene Information

• Locus tag: Cphy_3885
• ID: 5742282
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium phytofermentans ISDg
• Kingdom: Bacteria
• Replicon accession: NC_010001
• Strand: -
• Start bp: 4773691
• End bp: 4775520
• Gene Length: 1830 bp
• Protein Length: 609 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 641294998
• Product: flavocytochrome c
• Protein accession: YP_001560971
• Protein GI: 160882003
• COG category: [C] Energy production and conversion; [S] Function unknown
• COG ID: [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; [COG3976] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR01813] flavocytochrome c

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.000688641
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGAAAGA GGAGAATGAA GATGAGAAAG TCAAAATTAG TAGTTCTTGG GTTAATTGCG 
GCTCTTGCAC TAACAGGCTG TGGCTCAAAA GCAAAAGAGG AACCAAAAAC ATCACCAGAT 
ACAGACGCAA CGGCAACAGC CATTCCAAGT GGGACTTTCA CTGGAGAAGG TGAAGGAAAA 
GGTGGAAAAA TCAAAGTTGA ATTAACATTA GAAAATGGAG AGATCAAAAA GATTGATGTT 
CTTGAAAATA ACGAAACTCA AGGATTTGCA GATGCAATGC AAACGATTAC TGATGCGATG 
ATTGGAACAA ACTCATTTGA CGTAGATTCT GTAAGTGGTG CTACCTTAAC ATCCACAGGA 
TTTAAAACAG CAGTAGAAAA TGCATTTGAA AAAACAGGTG CTTCCAAAGA TCAATTGGTT 
GCAAAAGAAG CAGCGGGAAC AAGTAATAAA GAAGAAAGAG AAGCAGCGTA TACTGCTGAT 
GTAGTTATAG TTGGTGCGGG TGGAGCTGGT TTAACAGCTG CAATTGAAGC TGCTAACAAC 
GGAGCTTCTG TTATTTTACT TGAAAAGATG CCAATGGAAG GTGGTAACAC ATTAATTTCT 
GGTGGTGAAT ATGCAGCACC AGGCAACTGG CTTCAAAAAG AAGAAGGTAT TGAGGATAGT 
AAAGATCAAT TCTATGAAGA CATCTTAAAA GGTGGAGACT ATGAAAATGA TCCGGAACTC 
GTTCGTGTCT TAGCAGATCA TGCATTAGAA TCTGCAGAAT GGTTAAAAGA TGAAGTAAAT 
GTAACATTTG AAGATTACAT GCTTTTCTTT GGTGGACATT CTGTAAAACG TAGTTTAGTT 
CCAAAAGATG CAAGTGGTGT GGAGTTAATT AGTAAATTGA CAAAAAAAGC GGGGGAAGTT 
GGTGTAATTA CTCACTTAAA TACTACTGCA AAAGAACTAG TTGTAGAAAA TGATAAAGTG 
GTTGCAGTAA AAGCAGAGTT TGACGGAAAA GAAATCACTT ACAGTGCAAA CAAAGGTGTT 
ATTCTTGCAA CTGGTGGATT TGGTTCCAAT CTTGAGATGA GAGTAAAATA TAACCCAGAA 
ATGAATGAAA AGATTCTTTC TACAAACTCT GTAGGTAGTA CCGGAGATGG TATTACAATG 
GCAGAAAACG TTGGAGCAGA ACTTGTAGAT ATGCAATACA TTCAAACTTA TCCAACATGT 
GATCCAGAAC TCGGAACACT TCTTTATGTT GGTGATGTTC GAATGGAAGG ACGTTCTATC 
CTTGTAAATA AAGAAGGAAA ACGTTTCGTA GAAGAATTAG AACGTCGTGA TGTTATTTCA 
AGAGCAGTGG TAGCACAAAC AGGTGGAGTT TCTTACATGT TCTGGGATGA AGCTTCCATG 
GTAGCAAGTG GCGTTAATGT AAAGCACCAA AGAGAATATG ATTACTTAAT TGAAAAAGGT 
ATCCTTATAA AAGCAGATAC AATCGAAGAA GCAGCTGCAT TCTTTGATAT TGATGCCGAA 
GAATTAAAGA AAACAGTAGA AAAATACAAT GAATACGCAA AGAATGGTAA AGATGAAGAG 
TTCAATAAGA GAGGTACATT AACAGCATTT ACAGGTGGAC CTTACTATAT CATGAAATCC 
AAGCCAGCAA TCCATCATAC AATGGGTGGT ATTAAAATCA ACACAGATGC AAATGTAATC 
AATACAGACG GAAACATAAT CAAAGGGTTA TTTGCTGCTG GTGAAGTAAC TGGTGATATC 
CATGGCACAA ACCGTTTAGG TAGTGATGCT ATTGCAGATA TTACTGTATT TGGTCGTATT 
GCAGGTAGAA ACGCTGCAAA AGCGGAATAA 

 

Protein sequence

MGKRRMKMRK SKLVVLGLIA ALALTGCGSK AKEEPKTSPD TDATATAIPS GTFTGEGEGK 
GGKIKVELTL ENGEIKKIDV LENNETQGFA DAMQTITDAM IGTNSFDVDS VSGATLTSTG 
FKTAVENAFE KTGASKDQLV AKEAAGTSNK EEREAAYTAD VVIVGAGGAG LTAAIEAANN 
GASVILLEKM PMEGGNTLIS GGEYAAPGNW LQKEEGIEDS KDQFYEDILK GGDYENDPEL 
VRVLADHALE SAEWLKDEVN VTFEDYMLFF GGHSVKRSLV PKDASGVELI SKLTKKAGEV 
GVITHLNTTA KELVVENDKV VAVKAEFDGK EITYSANKGV ILATGGFGSN LEMRVKYNPE 
MNEKILSTNS VGSTGDGITM AENVGAELVD MQYIQTYPTC DPELGTLLYV GDVRMEGRSI 
LVNKEGKRFV EELERRDVIS RAVVAQTGGV SYMFWDEASM VASGVNVKHQ REYDYLIEKG 
ILIKADTIEE AAAFFDIDAE ELKKTVEKYN EYAKNGKDEE FNKRGTLTAF TGGPYYIMKS 
KPAIHHTMGG IKINTDANVI NTDGNIIKGL FAAGEVTGDI HGTNRLGSDA IADITVFGRI 
AGRNAAKAE