Gene Cphy_3862 details

Gene Information

• Locus tag: Cphy_3862
• ID: 5744815
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium phytofermentans ISDg
• Kingdom: Bacteria
• Replicon accession: NC_010001
• Strand: +
• Start bp: 4736925
• End bp: 4744298
• Gene Length: 7374 bp
• Protein Length: 2457 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 641294975
• Product: endo-1,4-beta-xylanase
• Protein accession: YP_001560948
• Protein GI: 160881980
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG3693] Beta-1,4-xylanase

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAAA GAATTATTTC TTTTCTAATG TGTGCAATGA TGGTACTGCA ACTCCTACCT 
ATTGATCTCT TGCCTAACAG TTCGTCAATC GCCAGTGCGG CTTCAACAAC AGCATATTCC 
ATGGCGTCTG ATAGCGACAT CCAGAGTAAA ACAATCGGTA CCACATTCGA TGGCACCACA 
TGGTTTCAGA AAGCCGGCGG CCCGACGCTT ACTGTTGTTG ACAACAGTGG AGCCAAAGCC 
ATTAGTGTTA CAGGGCGGAC TGCAGACTGG AATAGCGTTG ATTTGAAAAA TTTAGTTTCC 
TTGCCTGATG GGTTTGAGTA CACTATCATG GTGACCGGCC GTACTTCTGA GGGCTCCAAG 
ATGAAGCTAT CACAGACGGC AAGCCCGTAT GGAACACATG CTTCTTTAGT TGTGGGCACA 
GATGGTATTT TCTCTCTTGA GAAGACCTTC ACGTATACCC AGTTACAGAC TGAGAAGACC 
GTTCGTATCC AGTCGGAAGG AACAACCAAC GACTTTACAA TTAACAGCAT CATAATCACC 
CAGACAGCAG TCTCAGATGG CGTAACATCT ACACCTACAC CTACCCCGAT TTCTGATGGT 
GCAACTACTA GCGACATCTC TATTTCCTTC AATACCACCG ACAATACCAA GTGGAGCGAA 
GCTTTTAGCG TGTCCAACAC AGATAATGCC GCAATTGAAT GGGTTTCGGA CTTCGGTAAT 
GGCGATACTT TTGCACTTAA GGGTATCCAC CTATCTACCT CGACTGACTA TACCGGCGCT 
AACAACGCCA TCCGTCTGAC ATTTCCTGAG CCATTGGCTA AGAACGCCGT TTACACTATT 
TCGTATAGCG TCTTTGTCCC AGCCGTAGGC AACGAGGGTA AAGATACACT TGTAGGACCG 
GGCATCGTCC TGAGTGGCGA TTATACAGGC TCAACAGGCG TGACCAAATT CCCGGCCGAC 
TTCGGCACAA TTAGTACAGA GACATGGAAA GATGTTAGTA TAACCACACC GGAAGGTGGT 
CTGAACGAGA CACTAAAGAG CATCGACTTC CGTTTCGTTG TAAACGAAGC AACGAAGCAT 
CCTGACGTGT GGTTTCTCGA TAATATCAAG ATCTCACAGA GATTAATTAA TGTTGAAAAC 
GTAGCTCCGG ATTACAAAAG TTATCCTGCA CTAAAGGATG TCTACAAAGA TTATTTCCTA 
ATTGGCGTGG CATCGAGTAA TTACCGGATG TCCGGTGACA AGCTTGATAT AATCAATTAT 
CATTTCAACA CATTTACGCC TGAGAATGAG ATGAAGCCCT CGAGTGTACA AAATGTCAAG 
GGTGTATTTA CCTATAGTGC CCTAGACGAA CAATTCGCTA AGCTTCCAGG CTTTAATCTG 
ATCGGCCATA CCCTAGCTTG GCACTCACAG TCGCCTACCT GGATGTGGGG TTCACCGACA 
CCTCTGCCTG CTGCAGATGC AAAGGCCAAT TTGGACGCAC ACATTACGGA TGTTTTGGAC 
CGTTATGGCG CAAACCTTTA CAGTATCGAC GTCGTTAACG AGGCTATGGC CGACGGCAAG 
AACAATGTCG ACTGGCGGCA GAATCTGCGT AGCAATGAGG GTTGGTACAC TGCTCTTGGT 
TCAGAGTGGG TTGAAGACGC ATTCCTTAAA GCAGCTGAAA TCGTTGACGC CAATGGTTGG 
AACTGCAAGC TTTACTACAA TGATTTCAAT CTCGACTATG CCGATAAGGC AAGATCTGTT 
TATAATATGG TTAAGGATAT CAACGAACGT TATGCCGGAA GACGTCCAAA CGGCAAGCCC 
CTTATCGAGG GTATCGGTAT GCAAGGACAC TATAATGAGA ACACCATCGT AGCTAACGTT 
GAGAACTCGA TCAACCTCTT TTCGACTCTT CCCGGTGTCT CTATTAGCGT TACCGAACTA 
GATATTACAT ACTTAAATTC GGGTAGTCTC ACCGAAGTTC AAGCTCATAG CCAGGCCGTT 
AAGTATGCAC AACTCTTTGA TGTTTATAAG AGGTATGCTG TAGGCCCTGC AAACGGAGGA 
AAGGGCCGCA TCGAACGTGT TACCTTCTGG GGAACAAACG ACGCTGACAG TTGGCGTGCA 
TCAACCTTCC CGTTGCTCTT TGACAAGAAT CTACGTGCTA AAGAAGCTTT CAAAGCCGTT 
CTTGATCCAA CTAAGTACTT AAGCACCGAG ATCCCTGCCG CAGGCCAGAC TTATGATAAA 
TATCCAGCAC TGAAAGACAT CTACAAAGAT TATTTCACCA TGGGTATTTT CGGCTCAGGC 
GAAACTAATG CCTTAGTTTA CAATTTTGCG GCATATGCAC CTGGTAATGA GATGAAGCCA 
GAAAGTACAC AAAATGTCAA AGGAACTTTT ACATACAATA GCGCGGACAC CGCGTTTAGT 
AATCTTCTAA GTAGGAATCC GAACATGCTT TTCTACGGAC ATACGCTTGC ATGGCATTCG 
CAGTCACCAA CGTGGATGTG GGACGCACCA CCTGCTAAAT ACGGACAACC AGGTACATAC 
GATAGAACCA CCGCATTAAA AAATCTCAAT GATCATATAG AAAATGTTCT CGGCTACTAC 
GGAGGACGTC TTGAAGGAAT CGATGTAGTG AATGAAGCCA TCGGTACTGC GAACCCTAAC 
GACTGGAAAT CTTCGCTAGC AAAAGGAGAA GGCTGGTATA TGGCACTCGG CTCAGACTGG 
GTTGAACTCG CATTCCTAAA AGCTGCCGAA GTTGTTGACA GTCATCCGGA TTGGAATTGC 
AAGTTGATCT ATAACGATTT CGGTCTTGAT TCTCCAAACA AAGCACGTGC AGTCTACGAG 
ATGGTTAAGA GCATTAACGA ACGTTATGAA GGCGTACGCC CGAATGGGAA AAACCTGATT 
GAGGTCATCG GTATGCAAGA ACATGATAAT CTCACCACAG ATGTTACATA TGTGGAAAAC 
TCCATCAAAC TGTTTGCGAC ACTTCCTGGT GTCAAAGTTA ATATTACAGA GATGGATATC 
GGATGCCCAC CTGTCGGAAC TCTCACCTCG GATAATGAGA ACAACCAGGC AATGAAGTAT 
GCTGAGTTGT TCCAGATTTT CAAAAAGTAT GCTACAGGCT CAGCTAATAC GACAAGCAAT 
CCAAAGGTAA TTGATCGCGT GAGTATTTGC GGCGTTAGAG ACGCTACCTC AGGTTGGCGT 
GCTGGTGAAT ATGCACTGCT ATTTACATCG ACAGGATTGG CAAAACAAGC TTTAGTAGCG 
GTTCTAGATC CCGATGCATT TCTTGCGGGA CATAAATACA TTGATACTGA TCCAAAACCG 
GAGATAAAGC CAGTTGACGG CGTCTTTGTT TATGATGCAG CCAAAGGAGA CGGATGGTCA 
GGTGCGAATA TTATCTTGGG TAACGGCGCA TCACAGTGGC CTTGGTCGAC AGCAGCAGAG 
GATGGTAAGG TGGCATTTAT TCCTGAGAAG GAAGCGACAT ACCGTCTCAC GATTAACTAC 
ACATCAGCAG GTACATCAGC CATTCGTGTG CGTTGGGTTG GGGACAACAC TAACGGTGGA 
TATACCACTG CAGATGGATC GGTTGTCAGC TCACCTCCAT ATAACACTAG TTTAAATCCT 
AGCATGGTGT CACCTAGAAT TCCTGCGTAC TTCAACAGCG GCATGGTGGC TGGCGGAACC 
TACAGTTTAG TTACTGAAAT CAAGCTTGAC GGTTCTCAGG CTGCAAATGG ACTAATTGGT 
AACATCGCTA TCCGTGGTGG AGCTGGCGGT AACGCCTTCT CTATTAACTC AATTAAGGTG 
GAGAAGATCG GTACCGGAGC ACCTGATCAG CTACTAGTTA GCTGGCCGGC ATCTCCAACA 
ATAGCATATA CCGCAATAGC AAATGGTGTC GCAAATACCA CTACCTCCAA TTCTATCGCA 
CTTACCTTTA ATAATCCGGT ACCGGGATTT GTAGCCACCG ACATCACCCT CACAGCAGGC 
ACCGCTAATG CAACATTAGG CGCTTTGACT GTAGTGGACG GCTCGAACGA TACAAAATAC 
AACCTTGCTA TCAGTGGAAT TACTATGGAA GGTAACGTTA ATTTAAAGAT TACAAAGGAC 
GGCGTAGATA ATGTAGTAAA GGTCGTTGAT ATTCACAGAA TTCCAATTAC CTTTACCGTA 
GCGAATGTTG GAGGCAATGC CTTTGTAAGT AATAGTACCG CTTTAAGGCT AACATTTAAT 
GCAGCTGTAA CTAGTCTGTC GGCAGAAGAC ATTATTCTAC TCCCTGGAAC TCCTACTGCT 
GTATCAAACT ATGCAAGTTC ATTAGCGCAG AAGGGCCTTC TTACGAAAGT AAGCGACACT 
ATATATGAAC TTGCGCTCAC AGGCATTACC AAAACAGGTA CACTTGGAGT CAAAGTCAAT 
AAAATAGGGA TTGAAGCCAA TCAGAAGAAT GTAATTGTAA ATGCAAAAGT TGATAAGACC 
GCATTGCAAC CTACACCTCC TCGTAGTTAT TTCCCTCAGA ATATAACTAA CCTACCAAAA 
TCATCAGGCT TAAACGATCT GTTCCAGTTC TTGGATTCTA ATGCAGGTAC AAATGGCCGG 
GTTGAAACCG CAGCTGATTG GACGGCACGT AAAGCCGAGC TAAAAGACTT AATTCAATAC 
TATTACTACG GCAGATATTA CCCGACAGCA AAGACTTGTA TTACGGTGAA TACCGCTACG 
AACCAGGTTA ATGTCACCAT AAATGATAAT GGTAGAAGCG TGACCGGAAG CCTTGGCACC 
GTAACGGTTC CTACTGGTAC AGCTCCGGAA GGCGGCTGGC CGGTTATTAT CGCCTTTGGT 
TTTGGCCAGA CGTCAATGGC AACCCAAAAC GGTTACGCAG TAATTAACGT CTCCAACTGG 
GGTGGAAGCA GAACCGGAAA CTACTATAAT CTGTATCCGT TTAACGCCTA CGATTACGAT 
TTCAATACAG GCTCAATTAT GACAGCAGCA TGGACTGTCT CCCGTATCAT AGACGCGATG 
GAGATTAGCC AAACAGCGAA TGGCGGTAAG AATCAATGGA ACATCAACCC GTATAAGTCC 
ATTACAACAG GCGTATCCAT TAACGGTAAA TATGCTCTGA TGGCAGCAGC TATGGACGAT 
CGTGTCGGTG CAGCAGCACC TGTTGATTGC GGACAATCCG GTGCATCTAG CTTCCGTTAT 
ACCGCTGAAG GAAAATTGTT CTACTATAAT TCACCATTAG ACCGTATCTA TCGTAGAAAT 
CAGAAAGCTT TAAACAGTAT TCAGTATAGT GGTGAATCAT TCTGGATGGG GCTTGGAACA 
GCAGCTGGAT TCCATCAACA AGTAGATATC GATTATTTAC CTTTTGACGC GCATGCTGTT 
GAGGCTCTAG TAGCACCTAG ACCGCTTATC GCGTTTACCG CAGATAATAA TTTCGACTGG 
ACTACCCCGC CGTCCTCAGT AATGGATATG TTAGCTGCTA AGGAAGTCTA CGAGTTCTTA 
GGTAGCGGCG ACAACATTGC TGTACGTACG CGTGACGGTG CACATGCAAT ACAGGATAGA 
GATGTTCCGT TCATGTTAGC AATCATGGAC AATGCATTTG GCGGAAAGCC GCTAGAAGTC 
AGAGATCTCT ACCCTAAGAG TAACCCACCA AGCTATGGTA TAGGAACCTA TGCTAATATT 
TCAGCTATGT CGATTTACCC TTACGATATT GACAGTTCCT ACATTCGTTG GTCTCGTCCA 
GGCAAATACA CGCTATGGAC CGAAAACGAG ATTGTCACCG AAGGTATCCC TGCAACAATC 
AAGGTTCATT CTGATGCCGG GCAGGTTAAA TTGACGATTC TAGATGCGGA CAACAAACCG 
ACAGAGTCTA CATGGACAGC CAATGTAGTT GGTGGCATCG CTGTGTTTAA CCTAACAGCG 
GATCAAGTTA AGATAGGGCG TTACCAGATT ACTACGGTTG GTACCGCAAA GGATGGCAAG 
ACTGTGTACT TCCAAGGCAT AGACGTAGCT ACCGCACTGC GTCACGGCAC CGCCAGAAAT 
GACAACGGCG CGGCTGTTAT GTATGGATTT ACCAGTAAGA TCAATAAAAA TATGGTAGAA 
GTTTACGCAG ATAGCAATAA GTTGACAAAG TCCCTCCAGG AGGACACAGA GCAGGCTTGG 
ATTCTTAATT ATGGCGTAAC AACTAACCCT AATGAGAACA ACCGCATACT AAATAACGCG 
TTCAATGTAA TTACACTGAA AAAGCTGCAA ATGGAGGCTA TGCCTGGCTA TACATTTGAG 
ATTTCCATTG ACAAGTCTAA ACTTGCTAAC AATCAGGAAA CTATCAGTTG GAACGCATCG 
GCAGCGGTAC AAAAGATCGG TCCTCAGCCG AACTGGCCTC TGTATCCAAA CAGCCTGACA 
GATGACGGAA CCCGCCCATT ACGCCCGGCG ACAGCTACCA ACTTTAACGC CACTACTACT 
TTCAGTTTAA ATGATCTGGC AAATCTCGAT GTTGGCGATA AATTGGTGAT TACATTCAAT 
GAGCCTATGT ACAAAGGCGA TTTCGGTATC GGATTTGATT TCTCCGATGA CTTTTTACTT 
ACATGGGCAG ATGATAACAA ATCGGTAGAA GTGACATTTA ACAATGTAAC AAAAGGGAAA 
GGTGAAGTTT GCAATATTTA TACTATGCGC TTAAGTGATG CCGCTGGTAA TATGATTGCA 
GCTCCAATCC ACCATTCGTT CACTCGTAAG CCTGCCTCCG AAGGCCCTAT TACGATTACG 
CCAACCCCAA CGGTTACGGA GGTTCCAACG GTTACGGGTG CCCCGACTGC AACCCCTACT 
CCTACACCAG AGTTAACAAC AGAAGAGATT CTAGAGCACT TAACACCAAA ACGCACTGGT 
ACTCTATATG TTGGAGGTAA GAGTTTTAAC TTAGGATGGT TTGGATTAAA GCTTCCAAAT 
AACGTTGTTA AAGTAGCTAA CTTTGATGAA AAGACATTAA GTAAGCTTGA TGAGGGAATA 
GTTCCAATTA CGATTACTTA TAAGTCAAAT AATCCAGGTA TTGTAGAAGT AAAACAGAAT 
GGACGTTTGA TTGCAAAAGA ATCTGGTATT ATAGTTATTA CGGCTACTGT TACAATGCAG 
GATGGAACAC AGAAGGTTTA TACTAGAAAA TTATCTGTTA AAAAAGCGAC CATTGAATTT 
GTGGAAAGTG CTGTGCATAT GAAAGTGGGA GAAGAAGCAG TATTTAAAAT AAAAGTAAAT 
GGTTTAGATG AAGATAGCAT CCTCTGGATG TCTAGTAAAA AGGATGGAGT AGTTGTGAAG 
AAGAATCCAG GAAGTACAAC TGCAACAGTT AAGGCCGTTT CTGCAAAAAC AGATTGGATT 
TATGTAAATG TAGATGGTAT GAAGAAGTCA ATTAAAGTTA TTATTGAAGA GTAA 

 

Protein sequence

MKKRIISFLM CAMMVLQLLP IDLLPNSSSI ASAASTTAYS MASDSDIQSK TIGTTFDGTT 
WFQKAGGPTL TVVDNSGAKA ISVTGRTADW NSVDLKNLVS LPDGFEYTIM VTGRTSEGSK 
MKLSQTASPY GTHASLVVGT DGIFSLEKTF TYTQLQTEKT VRIQSEGTTN DFTINSIIIT 
QTAVSDGVTS TPTPTPISDG ATTSDISISF NTTDNTKWSE AFSVSNTDNA AIEWVSDFGN 
GDTFALKGIH LSTSTDYTGA NNAIRLTFPE PLAKNAVYTI SYSVFVPAVG NEGKDTLVGP 
GIVLSGDYTG STGVTKFPAD FGTISTETWK DVSITTPEGG LNETLKSIDF RFVVNEATKH 
PDVWFLDNIK ISQRLINVEN VAPDYKSYPA LKDVYKDYFL IGVASSNYRM SGDKLDIINY 
HFNTFTPENE MKPSSVQNVK GVFTYSALDE QFAKLPGFNL IGHTLAWHSQ SPTWMWGSPT 
PLPAADAKAN LDAHITDVLD RYGANLYSID VVNEAMADGK NNVDWRQNLR SNEGWYTALG 
SEWVEDAFLK AAEIVDANGW NCKLYYNDFN LDYADKARSV YNMVKDINER YAGRRPNGKP 
LIEGIGMQGH YNENTIVANV ENSINLFSTL PGVSISVTEL DITYLNSGSL TEVQAHSQAV 
KYAQLFDVYK RYAVGPANGG KGRIERVTFW GTNDADSWRA STFPLLFDKN LRAKEAFKAV 
LDPTKYLSTE IPAAGQTYDK YPALKDIYKD YFTMGIFGSG ETNALVYNFA AYAPGNEMKP 
ESTQNVKGTF TYNSADTAFS NLLSRNPNML FYGHTLAWHS QSPTWMWDAP PAKYGQPGTY 
DRTTALKNLN DHIENVLGYY GGRLEGIDVV NEAIGTANPN DWKSSLAKGE GWYMALGSDW 
VELAFLKAAE VVDSHPDWNC KLIYNDFGLD SPNKARAVYE MVKSINERYE GVRPNGKNLI 
EVIGMQEHDN LTTDVTYVEN SIKLFATLPG VKVNITEMDI GCPPVGTLTS DNENNQAMKY 
AELFQIFKKY ATGSANTTSN PKVIDRVSIC GVRDATSGWR AGEYALLFTS TGLAKQALVA 
VLDPDAFLAG HKYIDTDPKP EIKPVDGVFV YDAAKGDGWS GANIILGNGA SQWPWSTAAE 
DGKVAFIPEK EATYRLTINY TSAGTSAIRV RWVGDNTNGG YTTADGSVVS SPPYNTSLNP 
SMVSPRIPAY FNSGMVAGGT YSLVTEIKLD GSQAANGLIG NIAIRGGAGG NAFSINSIKV 
EKIGTGAPDQ LLVSWPASPT IAYTAIANGV ANTTTSNSIA LTFNNPVPGF VATDITLTAG 
TANATLGALT VVDGSNDTKY NLAISGITME GNVNLKITKD GVDNVVKVVD IHRIPITFTV 
ANVGGNAFVS NSTALRLTFN AAVTSLSAED IILLPGTPTA VSNYASSLAQ KGLLTKVSDT 
IYELALTGIT KTGTLGVKVN KIGIEANQKN VIVNAKVDKT ALQPTPPRSY FPQNITNLPK 
SSGLNDLFQF LDSNAGTNGR VETAADWTAR KAELKDLIQY YYYGRYYPTA KTCITVNTAT 
NQVNVTINDN GRSVTGSLGT VTVPTGTAPE GGWPVIIAFG FGQTSMATQN GYAVINVSNW 
GGSRTGNYYN LYPFNAYDYD FNTGSIMTAA WTVSRIIDAM EISQTANGGK NQWNINPYKS 
ITTGVSINGK YALMAAAMDD RVGAAAPVDC GQSGASSFRY TAEGKLFYYN SPLDRIYRRN 
QKALNSIQYS GESFWMGLGT AAGFHQQVDI DYLPFDAHAV EALVAPRPLI AFTADNNFDW 
TTPPSSVMDM LAAKEVYEFL GSGDNIAVRT RDGAHAIQDR DVPFMLAIMD NAFGGKPLEV 
RDLYPKSNPP SYGIGTYANI SAMSIYPYDI DSSYIRWSRP GKYTLWTENE IVTEGIPATI 
KVHSDAGQVK LTILDADNKP TESTWTANVV GGIAVFNLTA DQVKIGRYQI TTVGTAKDGK 
TVYFQGIDVA TALRHGTARN DNGAAVMYGF TSKINKNMVE VYADSNKLTK SLQEDTEQAW 
ILNYGVTTNP NENNRILNNA FNVITLKKLQ MEAMPGYTFE ISIDKSKLAN NQETISWNAS 
AAVQKIGPQP NWPLYPNSLT DDGTRPLRPA TATNFNATTT FSLNDLANLD VGDKLVITFN 
EPMYKGDFGI GFDFSDDFLL TWADDNKSVE VTFNNVTKGK GEVCNIYTMR LSDAAGNMIA 
APIHHSFTRK PASEGPITIT PTPTVTEVPT VTGAPTATPT PTPELTTEEI LEHLTPKRTG 
TLYVGGKSFN LGWFGLKLPN NVVKVANFDE KTLSKLDEGI VPITITYKSN NPGIVEVKQN 
GRLIAKESGI IVITATVTMQ DGTQKVYTRK LSVKKATIEF VESAVHMKVG EEAVFKIKVN 
GLDEDSILWM SSKKDGVVVK KNPGSTTATV KAVSAKTDWI YVNVDGMKKS IKVIIEE