Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphy_3687 |
Symbol | |
ID | 5742711 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium phytofermentans ISDg |
Kingdom | Bacteria |
Replicon accession | NC_010001 |
Strand | - |
Start bp | 4530415 |
End bp | 4534251 |
Gene Length | 3837 bp |
Protein Length | 1278 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 641294797 |
Product | DNA-directed RNA polymerase, beta subunit |
Protein accession | YP_001560773 |
Protein GI | 160881805 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATAAAA ACAGAATACG TCCGATTAAG GTTGGAAAAG GCGTAAGAAT GAGCTATTCA AAGCAAAAAG AAGTACTTGA AATGCCAAAT CTCATTGAAG TTCAGAAGGA TTCCTATCAG TGGTTTTTAG AGGAAGGCCT AAATGAAGTA TTCGATGATA TTTCGCCGAT CGAAGATTAT AGCGATCATC TTAGCCTTGA GTTCGTAAGC TTTCAGCTCT GCGAGGATGA TGTTAAGTAT TCGATTGAAG AATGCAAGGA AAGAGATGCA ACCTATGCGG CTCCGTTGAA AGTAAAAGTT AGACTTCGTA ACAAAGAGAC GGAAGAAATC AATGAACATG ACATCTTCAT GGGTGACTTA CCTTTAATGA CTGAGACTGG TACCTTTGTT ATCAATGGTG CTGAACGTGT TATCGTTAGC CAGTTAGTAC GTTCCCCTGG AATTTATTAT GCAATTCAAC ATGATAAAGT TGGTAAGACT CTTCACTCCT CTACAGTAAT TCCTAACAGA GGTGCTTGGT TAGAGTATGA AACAGATTCC AACGATGTAT TTTATGTTCG AGTAGATAGA AATAGAAAAG TTCCGATTAC TGTATTGCTA CGTGCTATGG GTATCGGTTC CAACGCTGAA ATTGTTGAGA TGTTTGGTGA AGAACCAAAG ATTTTAGCAA GCTTTAGCAA AGACCCATCT GATAACTATC AAGATGGTCT TCTTGAGTTA TACAAAAAAC TTCGTCCAGG TGAACCACTT TCCGTTGAAA GTGCAGAGTC CTTAATTAAT AGTATGTTCT TCGATCCTAG AAGATATGAC CTTGCTAAGG TTGGACGTTT TAAGTTTAAT AAGAAGTTAG CTTTGAAAAA CCGAGTTCTA GGTTTCCCTT TAGCTGAGGA TGTTGTTGAT ACAGAGACAG GTGAAATCTT AGCAGAGGCT GGTACAATTA TTACAGAAGC TCTTGCAATT CGTATTCAGA ATAGAGCGGT TAAATCTATC TTAGTTCAGG CAGAAGAACG TAATGTTGTT GTTCTTTCTA ATATGATGGT TGATTTTGAA GAGTATGCCA CACTTGACTG TGACAAAGAA GAGTTAGGAA TCACAGAAGA AGTTTACTAC CCAGCTCTTC GTATGATTTT AGATTCCTGC AGCAGCCAAG AAGAAATTAA AGATGCTGTA GCAAAGCATA TTACTGATTT AATTCCAAAG CATATTACAA AGGATGATAT CTATGCATCC ATCAATTACA ATATGCACTT AGAATATGGA ATTGGTAATG AAGATGATAT TGACCATTTA GGAAATCGTC GTATTCGTGC GGTAGGTGAA TTATTACAGA ACCAGTACAG AATCGGTCTT TCCAGAATGG AGCGTGTTGT TCGTGAAAGA ATGACAACTC AGGATTTAGA AGGAATTAGT CCACAATCCT TAATTAATAT TAAACCAGTA ACAGCAGCAG TGAAGGAATT CTTCGGAAGT TCTCAGTTGT CCCAGTTCAT GGATCAGAAC AATCCTCTTG GTGAGCTTAC ACATAAGAGA CGTCTTTCTG CTCTTGGTCC TGGTGGTCTT AGTCGTGATC GTGCGGGATT CGAGGTTCGT GACGTTCACT ATTCTCACTA TGGTAGAATG TGTCCAATTG AGACACCAGA AGGTCCAAAC ATCGGTCTTA TCAACTCCTT AGCATCTTAC GCTAGAATTA ATCAGTATGG TTTTATTGAG GCACCTTATC GTAAGGTGGA TAGAACTGAC CCTGAAAATC CACGTGTTAC AGAAGAAGTT GTTTACTTAA CAGCGGATGA GGAAGATAAA TATGTTGTTG CACAGGCAAA TGAGCCGTTG GATGAAACAG GATATTTTGT AAATCAGAGT GTATCTGGTC GTTACAGAGA AGAGACTTCT TCTTATCAGA AGAGAAAAGT TGATTTAATG GACGTTTCTC CTAAGATGGT ATTCTCTGTT GCTACAGCGA TGATTCCGTT CCTTCAAAAT GATGATGCGA ACCGTGCGCT CATGGGATCT AACATGCAGC GTCAGGCAGT GCCATTGTTA TTTACTGAGG CACCTGTTGT TGGAACAGGT ATGGAATTAA AAACAGCAGT AGACTCTGGT GTTTGTGTTG TATCAAAGAA AGCGGGTACT GTTGAGAAAT CTACATCCCG TGAAGTTATA ATAAAGAATG ATGATGGAAC AAAGTCAAGC TATCGTCTTG TTAAATTTGC AAGAAGTAAC CAGGGTACTT GTATCAACCA AAGACCAATC GTGGTAAAGG GAGATAAGGT AGAAGCTGGC GAGGTTATTG CGGATGGTCC ATCTACTGCA AATGGTGAAT TAGCACTTGG TAAAAGCCCA TTAATCGGAT TTATGACCTG GGAAGGTTAT AACTACGAGG ATGCGGTATT ATTAAGTGAA AGACTTGTTC AGGAAGATGT TTATACTTCT GTTCATATTG AAGAATACGA AGCAGAAGCT CGTGATACAA AACTCGGACC AGAAGAAATC ACAAGAGATG TTCCAGGTGT TGGTGATGAT GCACTTAAGG ATCTTGATGA AAGAGGTATT ATCCGTATCG GTGCTGAAGT TCGTGCCGGA GATATCTTAG TTGGTAAGGT TACACCAAAG GGTGAAACAG AGCTTACCGC AGAAGAGAGA CTACTTCGTG CAATCTTTGG TGAGAAAGCA AGAGAAGTTC GTGATACTTC CCTTCGTGTT CCTCACGGTG AGTACGGTAT TATCGTAGAT GCTAAGGTAT TCACAAGAGA AAACGGTGAT GAATTATCTC CTGGTGTTAA CCAGACAGTA CGTGTTTATA TTGCTCAAAA GAGAAAGATT CAAGTTGGTG ATAAGATGGC TGGTCGACAT GGTAATAAGG GTGTTGTTTC CCGTGTGTTA CCAGCAGAAG ATATGCCATT CCTACCAAAT GGTAGACCGC TTGATATCGT ATTAAATCCT CTGGGCGTAC CTTCTCGTAT GAACATCGGT CAGGTATTAG AAATTCACTT AAGTCTTGCT TCCAGAGTAC TCGGATTTAA TGTTTCAACA CCAGTATTTG ACGGTGCAAA CGAGTACGAC ATTATGGACA CTTTAGAGCT TGCGAACGAT TATGTAAATG CTCCATTAGA TAAATTCGAA GCAAAATATA AAGATATATT AGATCCAGAA GTTATGGATT ACCTTGTATC TAATGAGGAT TACAGAAAAC AGTGGGAAGG TGTTCCAATT AACCGTGATG GTAAGGTTCG TCTCCGTGAT GGTAGAACCG GTGAGTACTT TGATAGTGCT GTAACCGTTG GATTCATGCA CTACTTAAAA CTTCACCACT TAGTAGATGA TAAGATTCAT GCTCGTTCTA CTGGTCCTTA CTCTTTAGTA ACTCAGCAGC CTCTTGGTGG TAAAGCTCAG TTCGGTGGTC AGAGATTCGG TGAGATGGAG GTTTGGGCAC TTGAGGCATA TGGTGCTGCT CATATCTTAC AGGAAATCTT AACTGTGAAG TCCGATGACG TTACAGGACG TGTTAAGACT TATGAAGCAA TCATTAAAGG CGATAATATA TCAGAACCTG GTATTCCGGA ATCCTTTAAG GTACTCCTTA AGGAACTTCA GTCTCTTGCA CTTGATGTTA CAGTTCTTGA TGAGAACGGT GATGAAGTTA AGATGACAGA AAACATCGAT TACGGTGAAA CAGAGTTTAC GCAGTATATT GAGGAAGATA ACTTCAAATA TGATGAGGGC TTTGAAGAAG CTGGATACAG TGAAGTGAAT CCGGAGGAAG AAAGCGACAC ATTCGAAAGC TTCGACGAGA ATGAAAGCGT AGTGGATTTT AGTGAGTCGG ATGATTTCGG AGAATAA
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Protein sequence | MDKNRIRPIK VGKGVRMSYS KQKEVLEMPN LIEVQKDSYQ WFLEEGLNEV FDDISPIEDY SDHLSLEFVS FQLCEDDVKY SIEECKERDA TYAAPLKVKV RLRNKETEEI NEHDIFMGDL PLMTETGTFV INGAERVIVS QLVRSPGIYY AIQHDKVGKT LHSSTVIPNR GAWLEYETDS NDVFYVRVDR NRKVPITVLL RAMGIGSNAE IVEMFGEEPK ILASFSKDPS DNYQDGLLEL YKKLRPGEPL SVESAESLIN SMFFDPRRYD LAKVGRFKFN KKLALKNRVL GFPLAEDVVD TETGEILAEA GTIITEALAI RIQNRAVKSI LVQAEERNVV VLSNMMVDFE EYATLDCDKE ELGITEEVYY PALRMILDSC SSQEEIKDAV AKHITDLIPK HITKDDIYAS INYNMHLEYG IGNEDDIDHL GNRRIRAVGE LLQNQYRIGL SRMERVVRER MTTQDLEGIS PQSLINIKPV TAAVKEFFGS SQLSQFMDQN NPLGELTHKR RLSALGPGGL SRDRAGFEVR DVHYSHYGRM CPIETPEGPN IGLINSLASY ARINQYGFIE APYRKVDRTD PENPRVTEEV VYLTADEEDK YVVAQANEPL DETGYFVNQS VSGRYREETS SYQKRKVDLM DVSPKMVFSV ATAMIPFLQN DDANRALMGS NMQRQAVPLL FTEAPVVGTG MELKTAVDSG VCVVSKKAGT VEKSTSREVI IKNDDGTKSS YRLVKFARSN QGTCINQRPI VVKGDKVEAG EVIADGPSTA NGELALGKSP LIGFMTWEGY NYEDAVLLSE RLVQEDVYTS VHIEEYEAEA RDTKLGPEEI TRDVPGVGDD ALKDLDERGI IRIGAEVRAG DILVGKVTPK GETELTAEER LLRAIFGEKA REVRDTSLRV PHGEYGIIVD AKVFTRENGD ELSPGVNQTV RVYIAQKRKI QVGDKMAGRH GNKGVVSRVL PAEDMPFLPN GRPLDIVLNP LGVPSRMNIG QVLEIHLSLA SRVLGFNVST PVFDGANEYD IMDTLELAND YVNAPLDKFE AKYKDILDPE VMDYLVSNED YRKQWEGVPI NRDGKVRLRD GRTGEYFDSA VTVGFMHYLK LHHLVDDKIH ARSTGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAA HILQEILTVK SDDVTGRVKT YEAIIKGDNI SEPGIPESFK VLLKELQSLA LDVTVLDENG DEVKMTENID YGETEFTQYI EEDNFKYDEG FEEAGYSEVN PEEESDTFES FDENESVVDF SESDDFGE
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