| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3686 |
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| Symbol | |
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| ID | 5742710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | - |
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| Start bp | 4526626 |
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| End bp | 4530393 |
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| Gene Length | 3768 bp |
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| Protein Length | 1255 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 641294796 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001560772 |
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| Protein GI | 160881804 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAACAG AGATGATAAA TGAAAGTGTC AAGGATATCA CCTATGACGC GATTAAGATA
GGTTTGGCTT CGCCAGAGAA GATCAGAGAG TGGTCCAGAG GTGAAGTTAG AAAGCCAGAA
ACAATCAATT ACAGAACGCT CAAGCCAGAA AAAGACGGTT TATTCTGCGA AAAGATTTTT
GGACCAAACA AAGACTGGGA ATGTCATTGT GGTAAATACA AAAAAATCCG CTATAAGGGC
GTAGTATGTG ACCGCTGTGG AGTTGAGGTT ACAAAGGCAA GTGTTCGTCG TGAAAGAATG
GGTCACATCG AACTTGCAGC TCCAGTGTCT CATATTTGGT ACTTCAAGGG TATCCCAAGT
AGAATGGGTC TAATCTTAGA CCTTTCTCCA AGAACCCTTG AGAAAGTGCT ATATTTTGCA
TCTTATATTG TACTTGATAA AGGAACTACC GATTTACAGT ACAAACAGGT GTTAAATGAA
AAAGAATTCA GAGAAGCATA TGATAAATAT GGCGACAGGT TCCGTGTAGG AATGGGCGCT
GAAGCGATTA TGGAACTTTT AGAGGCCATT GATTTAGAGA AAGAATCAAA AGACCTAAAG
AGAGGCTTAA AAGAATCTAC AGGACAAAAG AGAGCTCGTA TTATTAAGAG ACTTGAGGTT
GTAGAAGCTT TCCGTGAGTC TGGAAATAAG CCTGAGTGGA TGATTATGAC AGTCGTTCCT
GTTATCCCAC CAGATTTACG TCCGATGGTA CAGTTAGACG GTGGCCGTTT TGCTACTTCT
GATATGAATG ACTTATATCG TAGAATTATT AACCGTAACA ATCGTCTTAA GAGACTTCTT
GAACTTGGTG CGCCTGATAT TATCGTTCGT AACGAGAAGA GAATGTTACA AGAAGCGGTT
GACGCTTTAA TTGATAATGG TAGAAGAGGT CGTCCTGTAA CTGGTCCTGG TAATAGACCA
TTAAAGTCCT TATCCGATAT GTTAAAGGGT AAGCAAGGTC GTTTCCGTCA GAACTTACTT
GGTAAACGTG TTGACTATTC TGGTCGTTCC GTTATCGTCG TAGGTCCTGA ACTTAAGATT
TACCAGTGTG GTCTTCCAAA GGAAATGGCA ATTGAATTAT TCAAGCCATT TGTTATGAAA
GAGTTAGTTG CAAAAGGAAC AGCTCATAAT ATTAAATCTG CAAAGAAGAT GGTAGAAAGA
TTACAGCCTG AGGTATGGGA TATCTTAGAA GAGGTAATCA GAGAGCATCC AGTAATGCTT
AACCGTGCTC CTACCCTTCA TAGACTTGGT ATTCAGGCCT TCGAGCCAGT ACTTGTAGAA
GGTAAGGCAA TTAAGTTACA TCCACTTGTA TGTACAGCTT TCAACGCCGA CTTCGACGGT
GACCAGATGG CGGTGCATCT ACCACTTAGT GTAGAAGCTC AGGCAGAGTG TCGTTTCCTT
TTATTATCAC CTAACAACTT GTTAAAACCA TCCGATGGTG GTCCTGTTGC GGTTCCATCT
CAGGATATGG TACTTGGTAT TTACTATTTA ACACTTCAAA AACCAGGTGA CATTGGAGAA
GGTAAGTATT TTAAGAGTGT AAATGAAGCA ATTCTTGCTT ATGAAAATGG TGTAATCTCA
CTTCATGCAA TGATTAAAGT TCGTAGAACT GGTCTTAACG CAGAAGGTGT AGAGGAATCC
AGAACAATAG AGTCTACCGT GGGAAGATTC ATCTTTAATG AAATTATTTC GCAGGATCTT
GGTTTTGTTG ATCGTAGCAA GCCAGAAAAC TTCCTTGCAC TTGAAATTGA TTTCCACACA
GGTAAGAAGC AGTTAAAGAA GATCCTTGAG AAATGTATCA ATACTCGTGG TGCAACTCAG
ACTGCAGAAA CTCTAGATGC GATTAAGTCT TTAGGTTATA AATACTCTAC TCGTGCAGCG
ATGACAGTAT CCATTTCTGA TATGACTGTA CCAGAAGCAA AGAAAGACAT TATCGAACGT
GCAGAAAAGC AGGTAGAAGA TATCGCCAAG AATCATCGTC GTGGTTTGAT GACTGAGGAA
GAGCGTTATA AAGCAGTTAT TGAAACTTGG AAAGAAGCCG ATGATGAAAT TACAAAGGAA
CTTCTTTCTG GACTTGATAA ATATAATAAC ATCTTCATGA TGGCTGACTC TGGTGCCCGT
GGTTCCGACA AGCAGATCAA ACAGTTAGCT GGTATGCGTG GTCTTATGGC AGATACATCT
GGTAAGACAA TCGAGTTGCC TATCAAGGCG AACTTCCGTG AAGGTCTTGA CGTACTTGAG
TACTTCATCT CCGCACACGG TGCTCGTAAA GGTCTTTCCG ACACTGCTCT TCGTACTGCC
GACTCTGGTT ACTTAACTCG TCGTCTTGTA GACGTATCTC AGGATTTAAT TATCCGTGAG
GTTGACTGTG GTGAAGGTAC TGATGAAATT CCAGGTATGG AAATTAAAGC CTTCATGGAT
GGAAAAGAAG TAATTGAAGG ATTAGAAGAC AGAATTATAG GTCGTTATGC ATGCGAGACA
ATCTACGATG ATAATGGTGA GTTAATTGTG AAGAAAAATC ACATCATCAC ACCAAAGCGT
GCTGCTCGTA TCGTAGCAAG CAAAGCATTC GAAGATCCAA ATGCAACGAT TAAGATTCGT
ACCGTTCTTT CTTGTAAATC ACACATCGGT GTTTGTGCTA AGTGTTACGG TGCAAACATG
GCTACTGGTG AAGCAGTACA GGTTGGTGAA GCAGTTGGTA TTATTGCGGC TCAGTCAATC
GGTGAGCCAG GTACACAGCT TACAATGCGT ACTTTCCATA CTGGTGGTGT TGCGGGTGAT
GATATTACTC AGGGTCTTCC TCGTGTCGAG GAACTTTTCG AGGCAAGAAA GCCAAAGGGA
CTTGCAATTA TCGCAGAATT CGGTGGTACT GTTACAATTA AGGATACCAA GAAGAAGCGT
GAAGTTATAG TTACTAGAAC AAGTAATGAT ACTTTAGAAT CGAAAGCATA CTTAATTCCT
TACGGTTCTA GAATTAAGGT TATGGATGAA CAGGTAATTG AAGCTGGTGA TGAGTTAACA
GAAGGTTCTG TAAACCCACA TGATATCTTA AAGATTAAAG GTGTTCGTGC AGTTCAGGAT
TACATGATTC AGGAAGTTCA AAGAGTTTAC CGTTTACAGG GTGTAGAAAT CAACGATAAG
CATATCGAAG TGATTGTTCG CCAGATGTTA AAGAAGGTTC GTGTTGAGAA TAATGGTGAT
GCAGAATTCT TACCAGGAAC TATGGTAGAT ATCTTAGAGT ATAACGATGT AAATGAAAGC
TTAGCAGCGA AGGGATTAGA ACAAGCAGAA GGAAAACAGG TAATGCTTGG TATTACCAAG
GCTTCTCTTG CAACAAACTC TTTCCTTTCC GCAGCATCCT TCCAGGAAAC AACGAAAGTT
CTTACAGAAG CAGCGATTAA AGGTAAGATT GATCCACTGA TTGGTCTTAA GGAAAACGTA
ATTATCGGTA AGCTTATTCC AGCAGGTACC GGTATGAAAC ACTATCGCAA TGTTAAGTTA
GATACGGATC AGAATCAGGA AATTACATTC TCTGAGGATG AGTTTGACAA TGGAAATTAC
GAAGGTAATT TCTCCGGTAA TGACTTTAAA CAAAACTTCT ATGAGAATGA AGACTTTAAT
TCGGATGAAG AAGTAAGCTT CACTGAGGAT GAATATTTCG AAGATGAAGA AAATGATCTT
TCCACTGAGA ATTTTGATGA TTTAAAATTT TCTGAGGAAG AAGAGTAA
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| Protein sequence | MPTEMINESV KDITYDAIKI GLASPEKIRE WSRGEVRKPE TINYRTLKPE KDGLFCEKIF
GPNKDWECHC GKYKKIRYKG VVCDRCGVEV TKASVRRERM GHIELAAPVS HIWYFKGIPS
RMGLILDLSP RTLEKVLYFA SYIVLDKGTT DLQYKQVLNE KEFREAYDKY GDRFRVGMGA
EAIMELLEAI DLEKESKDLK RGLKESTGQK RARIIKRLEV VEAFRESGNK PEWMIMTVVP
VIPPDLRPMV QLDGGRFATS DMNDLYRRII NRNNRLKRLL ELGAPDIIVR NEKRMLQEAV
DALIDNGRRG RPVTGPGNRP LKSLSDMLKG KQGRFRQNLL GKRVDYSGRS VIVVGPELKI
YQCGLPKEMA IELFKPFVMK ELVAKGTAHN IKSAKKMVER LQPEVWDILE EVIREHPVML
NRAPTLHRLG IQAFEPVLVE GKAIKLHPLV CTAFNADFDG DQMAVHLPLS VEAQAECRFL
LLSPNNLLKP SDGGPVAVPS QDMVLGIYYL TLQKPGDIGE GKYFKSVNEA ILAYENGVIS
LHAMIKVRRT GLNAEGVEES RTIESTVGRF IFNEIISQDL GFVDRSKPEN FLALEIDFHT
GKKQLKKILE KCINTRGATQ TAETLDAIKS LGYKYSTRAA MTVSISDMTV PEAKKDIIER
AEKQVEDIAK NHRRGLMTEE ERYKAVIETW KEADDEITKE LLSGLDKYNN IFMMADSGAR
GSDKQIKQLA GMRGLMADTS GKTIELPIKA NFREGLDVLE YFISAHGARK GLSDTALRTA
DSGYLTRRLV DVSQDLIIRE VDCGEGTDEI PGMEIKAFMD GKEVIEGLED RIIGRYACET
IYDDNGELIV KKNHIITPKR AARIVASKAF EDPNATIKIR TVLSCKSHIG VCAKCYGANM
ATGEAVQVGE AVGIIAAQSI GEPGTQLTMR TFHTGGVAGD DITQGLPRVE ELFEARKPKG
LAIIAEFGGT VTIKDTKKKR EVIVTRTSND TLESKAYLIP YGSRIKVMDE QVIEAGDELT
EGSVNPHDIL KIKGVRAVQD YMIQEVQRVY RLQGVEINDK HIEVIVRQML KKVRVENNGD
AEFLPGTMVD ILEYNDVNES LAAKGLEQAE GKQVMLGITK ASLATNSFLS AASFQETTKV
LTEAAIKGKI DPLIGLKENV IIGKLIPAGT GMKHYRNVKL DTDQNQEITF SEDEFDNGNY
EGNFSGNDFK QNFYENEDFN SDEEVSFTED EYFEDEENDL STENFDDLKF SEEEE
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