| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3619 |
|---|
| Symbol | |
|---|
| ID | 5742643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 4470123 |
|---|
| End bp | 4470851 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641294729 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001560705 |
|---|
| Protein GI | 160881737 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00878668 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTAATG TCAATGGCCG CTGGGCTCTC ATCACCGGTG CTAGTAGAGG TGTCGGATAT
CAAATCGCCA TATTTATGGC AAAGCAAGGA TGCAATCTTA TCTTACATAG CCGCTCATTA
GAGCATACTC ATGCAGTATT AGAAGAAGTA AAAGAACTTG GTGTCAATGC TTATTCCGTA
GCTGCCGAAT TGTCAAACCC GGATGAAGTT AGACATATGT TAGAAGAAAT TGATGCCCTT
GGTGTCGAGG TATCTCTTGT CTTTAACGAT GCAGGTGTGC AAGTTGCATA CCGCACTGAG
TATTTCAAAA CCCCGGTGGA AGATTTCACT TCAAGCTTTA TGATTAATAC CATAGCACCT
GCTATGATTT GTTATCATTT CCTTCCAAAG ATGATAGAAA AAGGGTTTGG CCGAATCCTT
AATACAACAA GTGGTATTCA AAATGAGCCT CAACAAGCCG GATACTCAGC AAGTAAAGCT
GCTCTTGATA AATATACTAA AGATTTAGCT TCGGTGGTAG AAGGTACCGA TGTTTTAATA
AACCTAACTG ATCCCGGTTG GTGCCGTACC TCTCTTGGCG GTCCGTATGC TCCAAATTCC
GTAGAATCTG TAATACCAGG TATCGTTGTT GGTGCCTTCG TAGATGATAA AAGAAGCGGA
AGATTATTTA ATGCACAATC TTTTTGCGAT ATGAGCTTAG AGGATGCGGT TAAAGAGGCA
CAAGAATGA
|
|---|
| Protein sequence | MINVNGRWAL ITGASRGVGY QIAIFMAKQG CNLILHSRSL EHTHAVLEEV KELGVNAYSV
AAELSNPDEV RHMLEEIDAL GVEVSLVFND AGVQVAYRTE YFKTPVEDFT SSFMINTIAP
AMICYHFLPK MIEKGFGRIL NTTSGIQNEP QQAGYSASKA ALDKYTKDLA SVVEGTDVLI
NLTDPGWCRT SLGGPYAPNS VESVIPGIVV GAFVDDKRSG RLFNAQSFCD MSLEDAVKEA
QE
|
|---|
| |