Gene Cphy_3508 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphy_3508 
Symbol 
ID5743619 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium phytofermentans ISDg 
KingdomBacteria 
Replicon accessionNC_010001 
Strand
Start bp4327062 
End bp4328393 
Gene Length1332 bp 
Protein Length443 aa 
Translation table11 
GC content35% 
IMG OID641294618 
Productintegrase family protein 
Protein accessionYP_001560596 
Protein GI160881628 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGAAG GAGTTGAAAA AGTACAGATG AGAAAAAAAG AAGAATTAAA AAAAATGGAA 
AGAAAATTAG GTGTGGAAAG TCTGCAAGGT AATAAGGAGG TACTGAACAA GAAAGAAAGC
AAGAAAGAAA TTAAGAAAGA ACAGAATGAA AAAAAGTCAT TGAATTTGCC TAAGGGAATT
ACTAGGTGTT CTGACGGCCG TTATCAAGCT AGATATACTT ATGAGGGACA TCGATATTGT
TTATATGGTA GAGATGTAAA AGAACTTGAG GAAAGACTAA ATAATGCAAA ATATGAGATA
CAACATGGTA TCTACGCAAA GGAAGAAAGA ATTTCATTAA ATGCTTGGTA TGAGACATGG
ATAAATGAGT ACAAGTCAAT GACAGTGAAA CAGGGTACAG TGGAGAGTTA CGAGTGTATG
TATCTTTATT ATGTGAAACC AGAATTAGGT AAGAGATTAA TAAAAGATAT TCGTGGAGAG
CATATTCAGA AATTGTATAA TGATCTATCC AGAAATGGTT ATTCGAAATC TACAATTTCA
CTTATTCATG TTCTGCTTGG TGCTATGTTT AAGCAAGCCC TAAAGAATGA ATTAATTAAA
AAGAATCCAG TTGATTTTAC AACTTTACCT AGAGCAGAAA GGAAGAAAGA AAGAAGAGTA
CTTACATTAA AGGAACAAGA GATATTATTA AAAGAAATTA CAGGGCATGA ATTAGAGCCA
GTAGTACGCT TATCATTAGC TACAGGGCTA AGGGTTGGAG AGGTTACAGG TTTAGAATGG
TGTGATGTTG ATTTTAATAA AAAAGAGGTA ACTGTCCGTG GAACATTAAA GTGTACAAGG
AAGGGTATGG AATATTATAA GGATACACCC AAAACAGATA AAAGTACTCG GAGCATTCCA
CTATTAGACA ATATGGAATT GATGTTAAAG AGATATCGAA TTATTCAAAA GGAACATAAG
CTTTCAATGG GGATTGATTG GAAACCGATA GAAGGACTAG AAGACTTGGT TTTCTTGAGA
GAAGATGGCA AACCATTCTC GGGTCAGCAT ATTAGACAGC AACTTGTTCA TATTGTGGAT
GGTATTAATG AGAAGTATTA TTCAAAGAAG TCAATTAGAC AAGAGAAACT CCTGGAAGAG
AAGTTTGATT ATTTTACACC CCATGCTTTA CGTCATACTT TTGCGACGAG AGCTCTTGAG
AATGGTATTC CACCAAAGGT TGTTCAGGAG ATATTAGGGC ATAGCAGTAT TACAATGACG
TTGGATTTGT ATACGCATGT TTTACCGCAG ACCAAAGCGC AAGAGATGAA AAAATTAGAA
TCGCTAATCT AA
 
Protein sequence
MEEGVEKVQM RKKEELKKME RKLGVESLQG NKEVLNKKES KKEIKKEQNE KKSLNLPKGI 
TRCSDGRYQA RYTYEGHRYC LYGRDVKELE ERLNNAKYEI QHGIYAKEER ISLNAWYETW
INEYKSMTVK QGTVESYECM YLYYVKPELG KRLIKDIRGE HIQKLYNDLS RNGYSKSTIS
LIHVLLGAMF KQALKNELIK KNPVDFTTLP RAERKKERRV LTLKEQEILL KEITGHELEP
VVRLSLATGL RVGEVTGLEW CDVDFNKKEV TVRGTLKCTR KGMEYYKDTP KTDKSTRSIP
LLDNMELMLK RYRIIQKEHK LSMGIDWKPI EGLEDLVFLR EDGKPFSGQH IRQQLVHIVD
GINEKYYSKK SIRQEKLLEE KFDYFTPHAL RHTFATRALE NGIPPKVVQE ILGHSSITMT
LDLYTHVLPQ TKAQEMKKLE SLI