| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3388 |
|---|
| Symbol | |
|---|
| ID | 5743665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 4140411 |
|---|
| End bp | 4145495 |
|---|
| Gene Length | 5085 bp |
|---|
| Protein Length | 1694 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 641294494 |
|---|
| Product | glucan endo-1,3-beta-D-glucosidase |
|---|
| Protein accession | YP_001560480 |
|---|
| Protein GI | 160881512 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2273] Beta-glucanase/Beta-glucan synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAGAA AAACAAAAGG TAACCTTAGT AAAAAGATTT TGTCAATTTG TCTTTGTACA
AGTATGGTAT TATGTTCTGC TGTACCCAAT ATAGTAAGAG CATCAGATCA AATACCAGAA
GAGTCTGTTC CTGTGATAGG AGATACTATT GTCACTAATG ATGGTACAAA CGATAACCTT
TGGAAGCTGG TATGGCAGGA TGAATTTAAT GGAACAGAAC TTGATACGAC AAAATGGGGA
TATCAGGTTG GTGATGGGTC AGCCTATGGA ATTGCGGGTT GGGGAAACAG TGAACAACAG
TACTACACCG ATGACGGAAA TAATGTGAGC TTTGAAGATG GTAAGCTAGT AATTACTGCA
AAGAAGAACC ATGATAGCAA CAAATATCAG GGAGCCTCTT ATACTTCAGG AAGAATCTGG
ACCAAGGGTT CCATCGATGC ATCCGAACAA GGAACACCCG CATTGTTTAC CAAAAAATAC
GGACGTTTTG AAGCAAAAAT TTCTATGCCA GAAGGAACAG GTTATTGGCC AGCCTTTTGG
ATGATGCCGG CTTATGATAA ATATGGAGGT TGGGCGTTGT CCGGTGAAAT CGATATTATG
GAAGCAAGGG GAAGACTCGT GAATCAAGTG GGCGGAACAC TCCACTATGG CGGTTCATGG
CCAAACAACA AATACATGGG TGATAACTAT ACTTCAGAAT CTTTTCGCAT CACGGACGAA
CATGTCTATG CTTTAGAATG GTTACCGGGC GTTATGCGTT GGTATGTGGA TGACATTCTT
TATTATGAAA CAAGCGATTG GTATTCAAAA AGAGATGGAA ATCCTGTAAA TTATACCTAT
CCAGCGCCTT TTGATCAGGA ATTCTATCTC ATGCTTAACT TGGCTGTCGG TGGAAATTAC
GATGGTGGAC AGCTAGATAC TTCACTGGAT AACAGACAGA TGAAGATAGA TTATGTACGA
GTTTATGACT TGGAAGGGCA GACATATGAT GAAAATGTAT TGCCTCCAGC CGTGTTACCA
GATCCTCTTC CAGAGGGAGT TGCTATAGGT TCTAATCTTA TTACTGGTAC CTTTGATGCA
ATTCACAAAG TGACAAGTGA TTATGCGAAT AATAGTACCA ATGGTTGGGA TTTGGTTTGT
TTGCCTGATT TTTCGGGAGA TGCGATTGCA GAAAAACAAG AAGACGATTC TGCAAGAATA
GCTATATCAT CACAGGGAAA CCAGACTTAT TCCATTCAAA TGATACATAA GCTTCCGTTA
ACAAAGGGAT ATCGCTATAA AGTATCTTTT GATGCAAAAG CAGATGCCTC ACGTACGTTG
GAAATTAAAG TAGCAAATCC GATAAATTTC AGTCTTTATT CGGATGTAGT TAATGCCACA
TTGTCTACGT CTTATAAGAC ACATCAGTTT ACTTTTGATA TGAGCAAAGA CTCCACAACA
GGAAGGCTAG AGTTAAATAT GGGACTTAGC AACATTCCTG TATCCATTAA AAATGTAAAA
GTTGAAGTAT TAGAATTAAT TGGGGATATT TCAGAGGATG CCCCAAAGCC ACCACTTGCA
AATGGAGAGC ATATTTATAA TGGAACCTTT GATCAGGGAA ATGCAACTCG TATGCAGTTT
TGGAGAGTGG TTGGAGCAAC AGGTAATGTT ACCGCTTTAG AAAGGGCTCT AAAACTATCG
GGCTTTGACG TATCCTTATC AGATTCCTTT ATAGAACAAG TAGGTTTAAA TCTATTAAAA
AAGGATACCT ATCAGGTAAA ATTCAATGCA AAATCGGAAC ATACCGGTAC GGTTAAGTTA
GAACTTTTAA GTGAAGATAG TATGACCGTC TATGGAAGTA AGGAATATGA GATAGGCTCT
ACTATGACAC CATGCGAATT AACTTTTACA ATGGGAACTG ATACAGATGA GATGTCAAAG
TTAAGAATCT ATGTAGGTGG AAATACAGGT ATCATTACGC TTGATGATAT CTCAATGAAG
CGCTTGACTG ATAATAATGT AAGTTATGAA GGTGTGAAAA TTTATCCGGT AGGTAATGGA
GATTTTTCAG CAGGGACCGC AGGATGGACT GTATCGCAAA CTGACTATGC TGTAGAGTCT
GAAAATGGTG AAAATGTTTG CTATGCAGTT GGTGCTAGGT GTATAAATAA TTACGATAAG
ATGCTATTGT ACCCAGGTGT TGATATTGCT AAGGGATTAA ATTACACAAT GAAGTTTAAG
GCGAGAACCT CAAGTGATCA GACTCAGACT CCGATTATCA GAATACAGCG TGAGGGCGGT
GACTGGGCAA GTGTACTGGA TACAAGCTTT GATATCACAA AGGAGTGGCA GGAATATACT
TATAATTTTA CAGCAGGGTT TTCAGGAAAC CTTGGACTTA AGTATCTGTT AGGGGCGTTT
AGTGAGATCT GTAGGTTTTA TGTTAAAGAT GTGGAGCTGT ATGTTACAAA TAAACCGTTA
TTACAAGGTG CATTTTTGGT TAGCTCTCAA GCTACACCAA AGGTATCCGA AGATATTATC
CTAAGGTACT ATGAAAAATC AGGATGGGAA AATGCAGAAA ATATAAAGTT TTCTATCAAT
AATGTCCCAG TCGATAGTAG CCTTGTTAGT TTTAATAAAG CAGATAAAAC GGTTACTTTA
AGATCTGAAT TATTTGATAG AGCTGGTGTC TATACCATAC AAGCAACAGC GGATGGATAT
GATTCAACGA ATGCATTAGT TCAGTCAGTA ATGGAGAGCG GTGGTAATCT CGTAGTCAAT
GGCTCTTTTG ATAATGGAAC AGAAGGCTGG GGCACCTATT TTCAAAATGG CTGTGGAACG
ATAGATGCTA CAGAAAAAAA TGCAAAGGTT CATTTTATAT GGCATGAGGG AAATACTTGG
GATTTACAGC TTTACCAAGA GAATATCCCA ATGGAAGGCG GAAAATCTTA TGTGTTAGAA
TTTGATGCAA GCGCTACGAT ACGCAGACCA TTTACCATAG AGCTTGGTGT GAAAAACGGT
GCAAATCCTT TATCTACAGC AGTATTAGAA AAAGATATCT CTCATTATAA GTTTCGATAT
GATTCCCCTG TATCCGGTGG AACAAAATTA AATTTTCTAC TTGGAAATGT AACTAAGGGA
GATTTGATAA CATCAAATCA AAACAATCCG CATGATATTA TCGTTGTCAA TATTGTGATT
CGAGAGATGA CACCGGAGGA ACTTTCCAAA GTAACCCCGG AAATGATTGT AAAGCAAACA
ATCAAATTAG GAGAAGATAG TATCTTAACT CATTCAATAG AAGCAGCTTG GAATGAAGCA
CCAAAGACTG TGTACATAAA CGGAGAAGCT GTACCGTCTA ATAAGGTTAC TTATTACGAA
GATTCAGTTA TCCTAGATAA AAGCTTATTC CTGGTAGCAG GAAATTATAG AGTTGTAATA
AAAGCTGCTG GTATGGATGA TACAATAGAG GTAACTCAGG TTGTGATAGG ATCCGATGGT
GAATTTATCA AAAATGGTAC TTTTGAAGAC TTTAGTTTTT GGGGATCATG GTTTATGAAT
GGAGATAAGA CCGGATCATT AGTAGTTTCG GAGGGAAAAA TAGCAGTAAC TTCTGCTGGT
CAGAGCTCTG AAACTTGGGC AATCCAAGTA TTCCAAGACT TAGTACCGGT TAGTAAAGGG
GTAGAATATA CACTTACCTT TGATGCAAAG TCTACGCAGA ATCACCAGAT TGTTGTACAA
TGCGCAGGTC AAGCAGATAA GACATTTATA TTAACTACAA CTCCTCAGAA ATATTCTTGG
ACCTTCACCT CAGCGATAAA TGGTACGAAA CTTAATTTCC TACTCGCTAC CAAAGAGGCA
GAAAATAATG TATATACAAT TGAACTTGAT AATATTTCTA TCAAGAGAAG CAGTGATGTT
GTAGTGACAC CAACTCCAAC ACCAGAGGTA ACACCAACAG TGACACCGAC TCCAACGCCA
GAAGTGACGC CGACAGTGAC GCCAACTCCG ACGCCAGAAG TAACACCAAC GGTAACGCCA
ATGGTGACGC CAACTCCGAT GCCAGAAGTA ACGCCGACAG TGGCGCTAAC AGTAACACCA
TCACCGACAC CGATAATTAC TCCAACCATA GTACCTATAC CGGAACAGGT TAGGAATCCG
GTTGAAGTAT ATATTTATGA TGGAGCTGCA AAGATTGTGT TAAATATGGA TGCTTCTTTA
ATAGAGTTAC CAGAGGAATT TATTCTTTCA CAACTTCGTA GCAATTATGT TGATAAGGTC
ATTATTGAAG TTAATACAAA ACATGAGATG CTACCTAATT ATGTGATTAA GAAGGAAGTT
TTGGAAGCGG CTGTTAAAAA TAATAAGGAT ATTTACTATG TTGTTAAGGA TAGTTTAGGT
ACAGTTCTTT ATGAGTTAAA ATTGGATGTC AATAATTTAG CTAAGGGAAC CATTACTGGA
GAGTTATCTC TCGGTGTTGA TATTGGTAGA ATATCTAATA ATAAGAGGAT AAGTAGTATT
TTATCGAAAG ATAAAAACAA TACTGACGGA CTCTTCCTTG ATTTTAAGCA ATCAGGAGTA
CTACCGGCGC AAAGTGAAAT TAAATTCTTT GTTGGGAAAG AGTATGGATT TAAAGCCTTA
CAGAAACTAT ATCTCTATTC GGTAAATAGT AATACCGGAA TGCTTGAGCC GGTACCATTT
GGTACAACAT ACAGAGTTGA TAAAGATGGT TATGTGGAAA TTCCTATTAT AAAAGGGAAT
GAGTATGTTC TATTAAAAGA AAAAGTATCG AAAGAAGGAA TTACATCGAC AAAAGATCTT
ATACAAGTAG AAAATGAATT AACTTTAAAC CAAGGAAAAA AACAACAAGT ATTAGCAGGT
CTTCCGATTA CTTTGGAAAG AGTTGAGAGC TTTACAATGA AGGCTTTATT CAGCGCCAAA
GGAAGAGTGG TTATAGCATA TCAATCCAGT GATGAAGAGA TTGCTACTGT TGATGAAAAT
GGAACGATTA CTGCTAAGAG CCAGGGTGCT GTTACGATTA CTACTAAAGT AAAATTATAT
TACGGAGCGA CTTATACCTA TCAGACCAAA GTAATTATCA AATAA
|
|---|
| Protein sequence | MRRKTKGNLS KKILSICLCT SMVLCSAVPN IVRASDQIPE ESVPVIGDTI VTNDGTNDNL
WKLVWQDEFN GTELDTTKWG YQVGDGSAYG IAGWGNSEQQ YYTDDGNNVS FEDGKLVITA
KKNHDSNKYQ GASYTSGRIW TKGSIDASEQ GTPALFTKKY GRFEAKISMP EGTGYWPAFW
MMPAYDKYGG WALSGEIDIM EARGRLVNQV GGTLHYGGSW PNNKYMGDNY TSESFRITDE
HVYALEWLPG VMRWYVDDIL YYETSDWYSK RDGNPVNYTY PAPFDQEFYL MLNLAVGGNY
DGGQLDTSLD NRQMKIDYVR VYDLEGQTYD ENVLPPAVLP DPLPEGVAIG SNLITGTFDA
IHKVTSDYAN NSTNGWDLVC LPDFSGDAIA EKQEDDSARI AISSQGNQTY SIQMIHKLPL
TKGYRYKVSF DAKADASRTL EIKVANPINF SLYSDVVNAT LSTSYKTHQF TFDMSKDSTT
GRLELNMGLS NIPVSIKNVK VEVLELIGDI SEDAPKPPLA NGEHIYNGTF DQGNATRMQF
WRVVGATGNV TALERALKLS GFDVSLSDSF IEQVGLNLLK KDTYQVKFNA KSEHTGTVKL
ELLSEDSMTV YGSKEYEIGS TMTPCELTFT MGTDTDEMSK LRIYVGGNTG IITLDDISMK
RLTDNNVSYE GVKIYPVGNG DFSAGTAGWT VSQTDYAVES ENGENVCYAV GARCINNYDK
MLLYPGVDIA KGLNYTMKFK ARTSSDQTQT PIIRIQREGG DWASVLDTSF DITKEWQEYT
YNFTAGFSGN LGLKYLLGAF SEICRFYVKD VELYVTNKPL LQGAFLVSSQ ATPKVSEDII
LRYYEKSGWE NAENIKFSIN NVPVDSSLVS FNKADKTVTL RSELFDRAGV YTIQATADGY
DSTNALVQSV MESGGNLVVN GSFDNGTEGW GTYFQNGCGT IDATEKNAKV HFIWHEGNTW
DLQLYQENIP MEGGKSYVLE FDASATIRRP FTIELGVKNG ANPLSTAVLE KDISHYKFRY
DSPVSGGTKL NFLLGNVTKG DLITSNQNNP HDIIVVNIVI REMTPEELSK VTPEMIVKQT
IKLGEDSILT HSIEAAWNEA PKTVYINGEA VPSNKVTYYE DSVILDKSLF LVAGNYRVVI
KAAGMDDTIE VTQVVIGSDG EFIKNGTFED FSFWGSWFMN GDKTGSLVVS EGKIAVTSAG
QSSETWAIQV FQDLVPVSKG VEYTLTFDAK STQNHQIVVQ CAGQADKTFI LTTTPQKYSW
TFTSAINGTK LNFLLATKEA ENNVYTIELD NISIKRSSDV VVTPTPTPEV TPTVTPTPTP
EVTPTVTPTP TPEVTPTVTP MVTPTPMPEV TPTVALTVTP SPTPIITPTI VPIPEQVRNP
VEVYIYDGAA KIVLNMDASL IELPEEFILS QLRSNYVDKV IIEVNTKHEM LPNYVIKKEV
LEAAVKNNKD IYYVVKDSLG TVLYELKLDV NNLAKGTITG ELSLGVDIGR ISNNKRISSI
LSKDKNNTDG LFLDFKQSGV LPAQSEIKFF VGKEYGFKAL QKLYLYSVNS NTGMLEPVPF
GTTYRVDKDG YVEIPIIKGN EYVLLKEKVS KEGITSTKDL IQVENELTLN QGKKQQVLAG
LPITLERVES FTMKALFSAK GRVVIAYQSS DEEIATVDEN GTITAKSQGA VTITTKVKLY
YGATYTYQTK VIIK
|
|---|
| |