| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3358 |
|---|
| Symbol | |
|---|
| ID | 5741640 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 4092636 |
|---|
| End bp | 4093718 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 641294461 |
|---|
| Product | 3-isopropylmalate dehydrogenase |
|---|
| Protein accession | YP_001560450 |
|---|
| Protein GI | 160881482 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTACA ACATAGCAGT AATTCCGGGA GATGGTATCG GTCCGGAGAT TATTACAGAA
GCAATGAAGG TACTAGATCA GGTTGGTCGT AAATTTGGTC ATACATTTAC CTATACAGAA
GTATTAATGG GAGGTGTCTC AATAGATACA ACCGGAGAAC CCCTTACGAA AGAGGCATTA
GAAACAGCTA AAGCAAGTGA TTCTGTACTC CTTGGAGCGG TCGGCGGTAA TGTAGGGCAT
AGTAACTGGT ATAGTCTACC TCCTCATTTA AGACCAGAAG CAGGATTATT AGCCATAAGA
AAGGGCTTAG GGCTATTTTG TAATCTTCGA CCTGCAGTGT TGTTTGAACA ATTAAAGCAG
GCATGTCCAT TAAAGGATGA GATTATTGGC GATGGATTTG ACTTTGTTGT TGTACGTGAA
CTTACCGGGG GAGTCTATTT TGGTGAAAGA AAAACTACAG TAGAAAATGG GATTAGAAAA
GCTGTTGATA CCATGCCTTA TGATGAAAAT GAGGTTAAAC GAATTGCAAG ATGGGCATTT
GAAGTGGCAA GTAAACGAAA AAGAAGAGTA TGTAGCGTAG ATAAAGCGAA TGTTTTAGAT
ACCTCAAGAC TTTGGAGACA GGTTGTAAAA GAAGTAGCGA TGGAATATCC GGAGGTAACT
TTAACAGATA TGTTAGTAGA TAATTGCGCA ATGCAGATTG TAAAGGACCC AACGCAGTTT
GATGTGATAT TGACAGAGAA TATGTTTGGC GACATCCTTT CGGATGAAGC GAGTATGGTG
ACAGGATCAA TCGGTATGTT AGCATCAGCA AGTCTTGGTG AATCAAAACT TGGATTATAC
GAACCAAGTC ACGGTTCTGC GCCAGACATA GCTGGAAAAA ATATTGCGAA TCCAATCGCA
ACAATATTAT CGGCTGCCAT GATGTTACGT TATAGCTTCG ATCTTACAAA AGAAGCTGAT
AGCATAGAAA ATGCAGTAAA AGAAGTATTA AACTTAGGGC TTCGTACCGC AGACATTATG
TCAGAGGGCT GTACGCTAAT AGGAACGAGA GAAATGGGAG ATTCCATTGT AGGACAGATT
TAA
|
|---|
| Protein sequence | MNYNIAVIPG DGIGPEIITE AMKVLDQVGR KFGHTFTYTE VLMGGVSIDT TGEPLTKEAL
ETAKASDSVL LGAVGGNVGH SNWYSLPPHL RPEAGLLAIR KGLGLFCNLR PAVLFEQLKQ
ACPLKDEIIG DGFDFVVVRE LTGGVYFGER KTTVENGIRK AVDTMPYDEN EVKRIARWAF
EVASKRKRRV CSVDKANVLD TSRLWRQVVK EVAMEYPEVT LTDMLVDNCA MQIVKDPTQF
DVILTENMFG DILSDEASMV TGSIGMLASA SLGESKLGLY EPSHGSAPDI AGKNIANPIA
TILSAAMMLR YSFDLTKEAD SIENAVKEVL NLGLRTADIM SEGCTLIGTR EMGDSIVGQI
|
|---|
| |