| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3263 |
|---|
| Symbol | |
|---|
| ID | 5741542 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 3970779 |
|---|
| End bp | 3971429 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 641294364 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001560356 |
|---|
| Protein GI | 160881388 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTACG ATTATATATT GTTTGATTTA GATGGAACAT TGACCGATCC AAAGCTTGGT
ATTACGAAAT CATTTGCATA TGCTTTAGAG CATTTTGATA TTCATATTGA AAATTTGGAT
TCCTTATGTA AATATATCGG TCCACCTATT GTGGATAGCT TTATGGATTT TGGATTTAGT
AAGGAGAAAG CATTAGAAGC TATAGATAAA TATAGAGAGT ATTTTAAGGA TTATGGTATC
TATGAGAATG AAGTCTATAA AGGTGTTGTA CAGTTATTAG CTACACTGAG AAGTAGAAAT
AAAAAGATAA TGCTTGCAAC TTCAAAACCA GAGGTATTTG CAAAGCAGAT ATTAGAGCAT
TTTGAATTAT TAGAGTACTT TGACTTTGTG GGCGGAAGTG AACTAAATGG CGATCGTTCA
GAAAAATCTG AGGTTATACA ATATGTATTA AAGGAAGGAA AGGTAACTGA TTTAACGAAA
GCAGTCATGA TTGGTGACCG TAAGTATGAT ATTTTTGGAG CAAAAGAAGT AGGAATTGAC
TCCATCGGTG TATTAAATGG ATATGGTGAC CAGGAGGAGC TTATTGCAGC AGGGGCAGAT
GCTATTGTAG CAAGTGTATG GGAATTAGTT AATAGGGAAG AGTTTCTTTA A
|
|---|
| Protein sequence | MNYDYILFDL DGTLTDPKLG ITKSFAYALE HFDIHIENLD SLCKYIGPPI VDSFMDFGFS
KEKALEAIDK YREYFKDYGI YENEVYKGVV QLLATLRSRN KKIMLATSKP EVFAKQILEH
FELLEYFDFV GGSELNGDRS EKSEVIQYVL KEGKVTDLTK AVMIGDRKYD IFGAKEVGID
SIGVLNGYGD QEELIAAGAD AIVASVWELV NREEFL
|
|---|
| |