| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3145 |
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| Symbol | |
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| ID | 5743231 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | + |
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| Start bp | 3839603 |
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| End bp | 3840919 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 641294244 |
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| Product | integrase family protein |
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| Protein accession | YP_001560239 |
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| Protein GI | 160881271 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00138908 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACAAA TCAGTCCGGA AGAGAAAAAA CTTTTGCAAG AATACTTTAC CTGCGGTACA
ATGAAGTCGG ATGAGCTGGA AAGTATAGTG AAAGAAATGA AGAAAGAAAA AGTTTTAAAG
AAGCATCCAT ACAAGATTAC ACCGCCGATT AAGGACGGTG GACGCTGGAT GACTTATATC
CTTGATACAG AGGTAAATAA AAGAGTCAAG ATTACTTCCT ACACCGAGGA TGGGATATAT
CAGAAACTAT ATAAGATTTA TTTTCCAGTA AAGAAAGAAA CCTTGGAAAT TCTGTATCCC
CTGTGGATTG AGAAACGTAA GGGCATGAAC CTGAGTAGCA GAACGATTCA AAGAAACCGA
AATCATTGGG AGAAGTATTA CGAAGACACT AAAATTGTTA GAAAGTCCAT TGACAGAATA
ACAGTCGAGG ATATCGAAGA TTTCTTTCAC AGTTGTATCA GTGATTATGA TATGACTAAG
AAAGATTTGG ATAATATGAA GCTGATTTTC AAAGACCTGA TGAAATATGC CAAGAAAAAA
GGATTAATCT TATCCAATCC ATATGATGAT ATCGAAATCA AATTGAATGG ATGTAAACCG
CCGAATAATC CCAAGGATGA AAGCAGGGTC TATCTCCCAG AAGAAAAGGA GAAGCTCTTT
CTTCAGCTGA ACAAGCGGTT AATGCAGATG CCTTTTGAGA CCGATGCCTA TGTTGTATTT
CTTCTCTTCA AGCTTGGGCT TAGAATTGGA GAAGCTGTGG CGCTGAAATG GGTGGATATT
GACTGGGAAG CCAGAGAAAT ACATATTCAT CGGATGGAAA GTCGTGTTGA AGATGAAAAC
GGGAAACTCA AAGTAGCCAT CTGTGAGTAT ACGAAGAAGA AAAGCCCTGC TGGTGACCGG
TATCTCCCTT TAAGTGATTA TGAAATTAAT CTGTTTCAGG CGGTTAAGCG TATCAATGAA
GAAGCTGGAT ATTCAGATGG GGATTTTATT TTCTGCGATA AAGAAGGCAG AACCAAGATT
CGCGAGGTCG ATAACTGTAT CCGTGCTCAG TGCAGACGTG CAGGAATTGA AGTGAAATCT
GCTCATGATA TTCGCAGAAC GGTAGCATCA GAAATGAGAA GAAAAAAAGT GGAAATTGAA
GACATTCAAT GGTATCTTGG TCACAATGAT GAAGCTACCA CTCGTACCTA CATACTGAAT
AACCAAGGAA AGCAGAAGAC ATCAGAACAA ATTGTGAATG CTCTTTCAGA GATGAACGGA
AGTGACGTAC TCATGGGTAC TCAAAACTCC GGAAATGAAA AATCGCCAGA AGCCTGA
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| Protein sequence | MKQISPEEKK LLQEYFTCGT MKSDELESIV KEMKKEKVLK KHPYKITPPI KDGGRWMTYI
LDTEVNKRVK ITSYTEDGIY QKLYKIYFPV KKETLEILYP LWIEKRKGMN LSSRTIQRNR
NHWEKYYEDT KIVRKSIDRI TVEDIEDFFH SCISDYDMTK KDLDNMKLIF KDLMKYAKKK
GLILSNPYDD IEIKLNGCKP PNNPKDESRV YLPEEKEKLF LQLNKRLMQM PFETDAYVVF
LLFKLGLRIG EAVALKWVDI DWEAREIHIH RMESRVEDEN GKLKVAICEY TKKKSPAGDR
YLPLSDYEIN LFQAVKRINE EAGYSDGDFI FCDKEGRTKI REVDNCIRAQ CRRAGIEVKS
AHDIRRTVAS EMRRKKVEIE DIQWYLGHND EATTRTYILN NQGKQKTSEQ IVNALSEMNG
SDVLMGTQNS GNEKSPEA
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