Gene Cphy_3109 details

Gene Information

• Locus tag: Cphy_3109
• ID: 5743195
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium phytofermentans ISDg
• Kingdom: Bacteria
• Replicon accession: NC_010001
• Strand: -
• Start bp: 3802071
• End bp: 3803957
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 641294209
• Product: glycoside hydrolase family protein
• Protein accession: YP_001560204
• Protein GI: 160881236
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3757] Lyzozyme M1 (1,4-beta-N-acetylmuramidase)

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0595324
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATAACG GAGAAAGAGA TAACAGAGAG CTTCAGGATA TGAAGGACTA TTTGGAAATT 
GTCTTATCCG AGCTTGATGA GGTCAAGAAA AAACTTAATG ATCAACCGGT AAGAAACCCT 
TACACGGAAT CGATGGAGCA AAAAAAGAAT AAAAAACGAA GAAGAACCTC ATTTAAGAAA 
CTAGCAATTT TAGAGGGTGC AATATTACTT ATAATTGGGA TTTCTTTTGC AGTTCACTTA 
ACATTAGATG CGAGAAGTAA TGTACCAACT TCTGGTGGCT CTATCTTTCA GGAGGGGAAT 
AGTGGTGGTG AGTTATCCCC AGCGGTAAAA ACAGTAAAGC AAGTGAAGGA ATTAGCAAAA 
TTAATTACGC CTGAGCTGCA AAACGAAATC GCACCATTTA AAGTAACAAC GGAACGGTTA 
TTTGGGCTTG AATATCTGGT ATTTACAGAT GGAACGGTAA AGATATGTTA TCGTAACGAA 
TTTTTAGAGG AAGAAATAGA GGATCGTCTC CGAATTCTTA TCGATAATGG GACAAAGATG 
ATGGAGCTGA ATTGGAATTA CGATCTAACT TCTGGTTTGG AAGGCTTATG TCCTAAGTAT 
GGCTCTTTTC TATCAGAAGG AATGAAGCAA TTCGCATTTC TAAATTATGC CGGGAAAGAT 
AGTAGCATCC CGAAGGAAGT GAGAATTATG GATGTCGATA CTTTATGGGA ATATCCAGTG 
TTTTCTATGG AGCAAGCGAT AAAAGATTTA TTTGTATTAA ATTATGAGGA ACTTCACAGC 
GTCACAAATC AAGACGGAGA TATGAGGATG ACGATGAAGT TAGGCTCAGC ATCCTATACC 
TATGCTATAA CTAAAGAAGC TTATATTGAT GCGGTATACT ATGATGAATT TTTACTGAAA 
TTTGATAAAA ATTTTGATTT AAAGATTGGT GAGGAAGGAT TTGTCTTTGA AACAGTGGTC 
TCACTTTCTG AGAAGGAGTA TCTTGGAGAA TTATCTGCAA AACTTATTTT AAAGGATGGA 
GTTATTTCTT TAGGTAAGAC AACCTATAGC GCTTACGTAA CCGCGGATCA AGAGGATAGT 
GAAAAAGGTG GTTTGATTAT TCCAAGTACA GACATCTTAG AGGATAGAAT TGCGTTATGG 
GGTCATGAAA ATAAGCGATA TTTGGTGCCA TTATCTAATA ATATTCCACG TTTATCCTAC 
CAGCCAGAGA ATTTTATTCC GTCAAATGGT AAGTTAGAAT ACATGGAGCA AGGGGTTAAG 
AAATCAATTC ATGGAATTGA TGTATCGAAG TATCAGGGAG ATATCGACTG GAAAAAGGTA 
AAGGAATCCG GAGTAGAATT TGCAATCCTT CGTCTAGGTT TTCGAGGATT TAATGAAGGT 
ACTTTAGAGA TTGACCCATA TTTTGTTAAA AATGTTGAAG GAGCTACGAA AGCAGGAGTT 
TCTGTAGGTG TTTATTTCTT TTCACAAGCA GTAACATTAG AAGAAGCGAA TGAGGAAGCG 
GAATTTATCC TAGAGTTAAT CAAAGATTAC AAAATTTCTT ATCCAGTTAT TTTTGATACT 
GAGTATGTTA CAACCTATGA TGCAAGAGCG AATAAATTAG CGAGACAGCT TAGAACAGAT 
ATTACGAAGA CTTTCTGTGA GAAGATTCAA ACGGCAGGTT ACCATCCAAT GATTTATGCA 
AACACAAAAT GGATGGTCAT GGGGATTGAC TTAGAGCAAT TATCGGAGTA CGATTTGTGG 
TTTGCTTATT ACGGAAATAA CCTAACTTTC CCTTATGATT TTCAGATGTA TCAGTATTCT 
GATTCGGGGA CAATTCCTGG TATCAAAGGA AATGTTGACT TAAATATTAG CTTTATAGAT 
TATGCAAACC CAGCCTTATC AGACTAA 

 

Protein sequence

MDNGERDNRE LQDMKDYLEI VLSELDEVKK KLNDQPVRNP YTESMEQKKN KKRRRTSFKK 
LAILEGAILL IIGISFAVHL TLDARSNVPT SGGSIFQEGN SGGELSPAVK TVKQVKELAK 
LITPELQNEI APFKVTTERL FGLEYLVFTD GTVKICYRNE FLEEEIEDRL RILIDNGTKM 
MELNWNYDLT SGLEGLCPKY GSFLSEGMKQ FAFLNYAGKD SSIPKEVRIM DVDTLWEYPV 
FSMEQAIKDL FVLNYEELHS VTNQDGDMRM TMKLGSASYT YAITKEAYID AVYYDEFLLK 
FDKNFDLKIG EEGFVFETVV SLSEKEYLGE LSAKLILKDG VISLGKTTYS AYVTADQEDS 
EKGGLIIPST DILEDRIALW GHENKRYLVP LSNNIPRLSY QPENFIPSNG KLEYMEQGVK 
KSIHGIDVSK YQGDIDWKKV KESGVEFAIL RLGFRGFNEG TLEIDPYFVK NVEGATKAGV 
SVGVYFFSQA VTLEEANEEA EFILELIKDY KISYPVIFDT EYVTTYDARA NKLARQLRTD 
ITKTFCEKIQ TAGYHPMIYA NTKWMVMGID LEQLSEYDLW FAYYGNNLTF PYDFQMYQYS 
DSGTIPGIKG NVDLNISFID YANPALSD