| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_2970 |
|---|
| Symbol | |
|---|
| ID | 5744031 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 3633580 |
|---|
| End bp | 3634968 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 641294070 |
|---|
| Product | SPP1 family phage portal protein |
|---|
| Protein accession | YP_001560066 |
|---|
| Protein GI | 160881098 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01538] phage portal protein, SPP1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.106894 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTAG AAACAATGAA AAAGGTGATT AAGAGGTATA CAACAGGGCA CACAAATTTT
ATTACTAATG CTGCTACAGC TGAAAGATAT TACCGGAACA AGAATGATGT CCTAAAGAAT
AAGCCCAGGA CAGAATCGGA TGAGACTGAA AACCCTCTCC GTAATGCAGA CAATCGGATA
CCGAGGAACT TCCACGGGTT ATTAGTTAAT CAAAAGGCAG CGTACATGTT CACTGCACCG
CCTCTTTTCG ATATCGGCGA TGACGATTCC AACAAACGGG TTACAGAAGT TCTGGGAGAT
AGATACGCCA AGACTACAAA GGACCTATGT ATTAATGCAT CTAACTGTAG TGTAGCATGG
CTTCATTATT GGATAAACTC AGAAAAAAAA TTCGAATATG GTGTGGTCGA TTCAAAGCAG
ATCATACCGA TATGGACAGC TGATTTAAAC AAGCAACTTA GTGGAGTCTT AAGAGTATAC
GAACAGCTGG ATGATAATGA TGGAGAACTA TATACCATAT ATCAATACTG GAATGATACT
GAGTGTCAGT CCTTCCGTAA AAAGACTTCC GATACTTTGG ATGATGGGCT ACAGTCTTAT
ACAATGTTTT GTTCTTTTGT AGACGGTGAA TCCTCACAGC AAGATACATT TATTCATGAT
TATGGCAGGG TGCCTTTTAT ACCTTTCTTC AACAATAATG TTGATTCAAG TGACCTTGAA
AATATTAAAG CGTTGATTGA TGTATATGAC AAAGTATTTT CAGGATTTGT TAATGACTTG
GAAGATATCC AGGAGATTAT CTTTGTATTG ACCGGGTATG GTGGAACTGA TCTGGCGCCG
TTCTTACAGG ACTTGAAGAA GTATAAAACT GTAAAGCTGG ATGATGATGG TGAAAATGTT
CATGCAGGTA TACAGACTTT GACCATAGAC ATACCTATAG AAGCCAGAGA GAAATTACTG
GATATCACAA GAAAAGCTAT ATTCGAACAG GGACAGGGAG TTGACCCACA ACCGGAGGCG
TTTGGTAATG CTTCGGGGGT AGCTCTTAAA TATTTATATT CTTTATTGGA ATTAAAAGCG
GGTCTAATGG AAACAGAGTT TAAACTTGCA TTTGGAGAGT TTGTACGGGC AATATGTAAG
TATCTTAATA CAGAGTGTAA GACAATCATT CAAACATGGA CACGTACTGC TATTACAAAC
GATTTAGAGC TTGCCACAAT TGCTTCACAA AGCCAAGGGA TTGTATCTGA TAAGACTATT
CATAAAAACC ACCCGTGGGT AGAAGATGCT GACCAAGAAG CGAAGCAGAT ACAAAAGGAG
CTATCCATGG AAAACGGTTA TGATTACGCC CTGCAACAAG GTGGTGACGT AGACGATGGC
GAAAAGTAG
|
|---|
| Protein sequence | MDLETMKKVI KRYTTGHTNF ITNAATAERY YRNKNDVLKN KPRTESDETE NPLRNADNRI
PRNFHGLLVN QKAAYMFTAP PLFDIGDDDS NKRVTEVLGD RYAKTTKDLC INASNCSVAW
LHYWINSEKK FEYGVVDSKQ IIPIWTADLN KQLSGVLRVY EQLDDNDGEL YTIYQYWNDT
ECQSFRKKTS DTLDDGLQSY TMFCSFVDGE SSQQDTFIHD YGRVPFIPFF NNNVDSSDLE
NIKALIDVYD KVFSGFVNDL EDIQEIIFVL TGYGGTDLAP FLQDLKKYKT VKLDDDGENV
HAGIQTLTID IPIEAREKLL DITRKAIFEQ GQGVDPQPEA FGNASGVALK YLYSLLELKA
GLMETEFKLA FGEFVRAICK YLNTECKTII QTWTRTAITN DLELATIASQ SQGIVSDKTI
HKNHPWVEDA DQEAKQIQKE LSMENGYDYA LQQGGDVDDG EK
|
|---|
| |