| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_2866 |
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| Symbol | |
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| ID | 5745140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium phytofermentans ISDg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010001 |
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| Strand | - |
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| Start bp | 3515369 |
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| End bp | 3517519 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 641293968 |
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| Product | ribonuclease R |
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| Protein accession | YP_001559965 |
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| Protein GI | 160880997 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0172601 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAAAG AAATATTAAA TAATAAAAAA GAGTTATTGC TTCAAGTAAT AACAGACAGA
TCTTATCGTC CAATGAAGTT TCGAGAACTT TCAAGTTTAC TTCAAGTTCC AAAGGATGAG
AGAGATGATT TAAAAATAGT TATGGATTCT CTGATATCTG ATGGGAAGAT TATGCTAGAT
GGGAATGGAA GATATAAAGA AACGAATGGT AATATAAAAA CGGGAATATT TTCTGGTACC
ACAAGAGGCT TTGGATTTGT TAAAATAGAG GGGGAAGAAA ATGAAGAAGA TATCTTTATC
CCAGAAAGCG AAACCAAAGG TGCATTGAAT AAAGACCGTG TACAGATAGC GATCTTTGAA
GAACAAAGTG GAAGACGAAG AGAGGGAGCG GTTATCAGTA TCCTAGAGAG AAACGTAACT
GAACTTGTTG GAACCTTCCA AAAAAGCAAG AACTTTGGAT TTGTTATTGC TGACAATACA
AAGTTTAATA GTGATGTTTT TATTCCTAAG GAACATACCA AAGGCGCAGT AAATGGCCAT
AAGGTATTAG TACAGCTAAC GGATTACGGT AGCGAAACAA AAAATCCTGA GGGTAAGATT
ATAAAAATTA TTGGTCATAT CAACGACCCT GGTGTTGATG TTGTATCGGT AATATTAGAA
AATGGATTGC CAACAGAATT TCCAGACGAA GTAATGAAAC AGGTAGAACG TATTGGGGAA
GAAGTAAGCA GTGCAGATAT TGGCGGAAGA GTAGATCTAA GAAATCTACA AACAGTAACC
ATAGACGGCG AAGATGCTAA GGACTTAGAC GATGCAATCA CATTATCTAA GAAAGGTGAT
ATCTATCAAT TAGGTGTTCA CATTGCAGAC GTTAGTAACT ATGTTACAGA AGATTCTCCA
CTTGATAAGG AAGCATTAAA GAGAGGAACC AGTGTATATT TAGTAGATAG AGTAATTCCA
ATGCTTCCTC ACAAATTATC GAATGGTATA TGTTCCTTAA ATGCGGGCAG TGACCGTCTT
GCATTATCCT GTATGATGGA GATAGATGAA AAAGGAAATG TGGTTGGTCA TCGAATTGCA
GAAACGGTGA TTAATGTTGA TCGAAGAATG ACCTATACTT CTGTGAAAAA GATCATAGAG
GATCATGACG AAGCAGAGAT AGAAGAGTAT AAAGAACTTG TTCCAATGTT TGAATTAATG
TTAGAATTAG CAGATATACT TCGTGAAAAG CGTAGAAAGC GCGGTTCCAT TGACTTTGAT
TTTCCGGAAA GTAAGATTAT ATTAGATTCT GATGGTAGAC CTACAGATAT CAAGCCATAT
GAAAGAAATA AAGCAACGAA GATTATTGAA GATTTTATGT TAATTGCCAA TGAAACTGTT
GCAGAAGATT TCTTCTGGCA AGAGTTACCG TTTGTCTATC GTACTCATGA GAACCCAGAC
TTAGAAAAGA TACAGAAGCT TAGTGTATTT ATCAATAATT TTGGATATAC CATGAGAATC
GGGCAGGATG AAATTCATCC AAAGGAATTG CAGAAACTAC TAATTAAGAT TGATGGTAAG
CCTGAGGAAG CATTAATTAG TAGATTGACA CTTCGTAGTA TGAAGCAGGC AAAGTACACC
ACGACTTGTG ATGGACATTT TGGTTTGTCT ACCAAATACT ATTCTCATTT TACTTCTCCA
ATCAGACGTT ATCCAGACCT TCAGATTCAT AGAATTATAA AGGAAAACTT ACGTGGAGGT
TTAAAGGAAA AACGAATCAA TCATTATGAG AGCATATTAA ATGAGGTAGC TAGGCAATCA
AGTTTAGCAG AACGTAGGGC AGATGAGTCT GAAAGAGAAG TAGAAAAACT CAAGAAAGTT
GAGTATATGA GCCAATTTAT TGGGCAAACC TTTGAAGGAG TAATCTCAGG AGTTACTTCT
TGGGGTATGT ATGTGGAACT TCCGAATACA GTAGAAGGTA TGATTCGACT TGCAGATATG
CATGATGATT ATTATATTTA TGATGAAGAA CATTATTTGT TAACAGGAGA GCATACCAAG
AAAATCTATA AATTAGGAGA GGCTGTCGTT ATCCGAGTTG AGGATACTGA CAAACTGATG
CGGACGATTA ATTTTTCTAT CGTAGGTAGG GCAAATCGCA TCGAAGAATA A
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| Protein sequence | MEKEILNNKK ELLLQVITDR SYRPMKFREL SSLLQVPKDE RDDLKIVMDS LISDGKIMLD
GNGRYKETNG NIKTGIFSGT TRGFGFVKIE GEENEEDIFI PESETKGALN KDRVQIAIFE
EQSGRRREGA VISILERNVT ELVGTFQKSK NFGFVIADNT KFNSDVFIPK EHTKGAVNGH
KVLVQLTDYG SETKNPEGKI IKIIGHINDP GVDVVSVILE NGLPTEFPDE VMKQVERIGE
EVSSADIGGR VDLRNLQTVT IDGEDAKDLD DAITLSKKGD IYQLGVHIAD VSNYVTEDSP
LDKEALKRGT SVYLVDRVIP MLPHKLSNGI CSLNAGSDRL ALSCMMEIDE KGNVVGHRIA
ETVINVDRRM TYTSVKKIIE DHDEAEIEEY KELVPMFELM LELADILREK RRKRGSIDFD
FPESKIILDS DGRPTDIKPY ERNKATKIIE DFMLIANETV AEDFFWQELP FVYRTHENPD
LEKIQKLSVF INNFGYTMRI GQDEIHPKEL QKLLIKIDGK PEEALISRLT LRSMKQAKYT
TTCDGHFGLS TKYYSHFTSP IRRYPDLQIH RIIKENLRGG LKEKRINHYE SILNEVARQS
SLAERRADES EREVEKLKKV EYMSQFIGQT FEGVISGVTS WGMYVELPNT VEGMIRLADM
HDDYYIYDEE HYLLTGEHTK KIYKLGEAVV IRVEDTDKLM RTINFSIVGR ANRIEE
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